PDB entry 6jky

View 6jky on RCSB PDB site
Description: Crystal structure of MvcA-UBE2N-Ub complex form Legionella pneumophila
Class: signaling protein
Keywords: Legionella pneumophila effect factor complex, SIGNALING PROTEIN
Deposited on 2019-03-03, released 2019-12-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MvcA
    Species: Legionella pneumophila subsp. pneumophila str. Philadelphia 1 [TaxId:272624]
    Gene: lpg2148
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZTL3 (2-384)
      • expression tag (1)
      • engineered mutation (72)
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme E2 N
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2N
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61088
      • engineered mutation (93)
    Domains in SCOPe 2.07: d6jkyb_
  • Chain 'C':
    Compound: Ub
    Species: Schistosoma margrebowiei [TaxId:48269]
    Gene: SMRZ_LOCUS12712
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6jkyc1, d6jkyc2
  • Chain 'D':
    Compound: MvcA
    Species: Legionella pneumophila subsp. pneumophila str. Philadelphia 1 [TaxId:272624]
    Gene: lpg2148
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZTL3 (2-End)
      • engineered mutation (72)
  • Chain 'E':
    Compound: Ubiquitin-conjugating enzyme E2 N
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2N
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61088
      • engineered mutation (93)
    Domains in SCOPe 2.07: d6jkye_
  • Chain 'F':
    Compound: Ub
    Species: Schistosoma margrebowiei [TaxId:48269]
    Gene: SMRZ_LOCUS12712
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6jkyf1, d6jkyf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6jkyB (B:)
    maglprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflpe
    eypmaapkvrfmtkiyhpnvdklgricldilkdawspalqirtvllsiqallsapnpddp
    landvaeqwktneaqaietarawtrlyamnni
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jkyB (B:)
    aglprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflpee
    ypmaapkvrfmtkiyhpnvdklgricldilkdawspalqirtvllsiqallsapnpddpl
    andvaeqwktneaqaietarawtrlyamn
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6jkyC (C:)
    cgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
    dyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jkyC (C:)
    gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlr
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >6jkyE (E:)
    maglprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflpe
    eypmaapkvrfmtkiyhpnvdklgricldilkdawspalqirtvllsiqallsapnpddp
    landvaeqwktneaqaietarawtrlyamnni
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jkyE (E:)
    glprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflpeey
    pmaapkvrfmtkiyhpnvdklgricldilkdawspalqirtvllsiqallsapnpddpla
    ndvaeqwktneaqaietarawtrlyamn
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >6jkyF (F:)
    cgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
    dyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jkyF (F:)
    smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlr