PDB entry 6jjm

View 6jjm on RCSB PDB site
Description: Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to the oligosaccharide portion of the GM2 ganglioside
Class: viral protein
Keywords: glycoprotein, viral protein, beta-propeller, receptor binding, sugar
Deposited on 2019-02-26, released 2019-05-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HN protein
    Species: Mumps rubulavirus [TaxId:1979165]
    Gene: HN
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WAF5 (Start-479)
      • expression tag (480)
    Domains in SCOPe 2.08: d6jjma1, d6jjma2
  • Chain 'B':
    Compound: HN protein
    Species: Mumps rubulavirus [TaxId:1979165]
    Gene: HN
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WAF5 (Start-479)
      • expression tag (480)
    Domains in SCOPe 2.08: d6jjmb1, d6jjmb2
  • Heterogens: NAG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jjmA (A:)
etggnqnqllstlatirtgkkqvsncstniplvndlrfinginkfiiedyathdfsighp
lnmpsfiptatspngctripsfslgkthwcythnvinanckdhtssnqyismgilvqtas
gypmfktlkiqylsdglnrkscsiatvpdgcamycyvstqletddyagsspptqkltllf
yndtvtertisptglegnwatlvpgvgsgiyfenklifpayggvlpnstlgvksareffr
pvnpynpcsgpqqdldqralrsyfpsyfsnrrvqsaflvcawnqilvtncelvvpsnnqt
lmgaegrvllinnrllyyqrstswwpyellyeisftftnsgqssvnmswipiysftrpgs
gncsgenvcptacvsgvyldpwpltpyshqsginrnfyftgallnssttrvnptlyvsal
nnlkvlapygnqglfasyttttcfqdtgdasvycvyimelasnivgefqilpvltrltit
gtkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjmA (A:)
iplvndlrfinginkfiiedyathdfsighplnmpsfiptatspngctripsfslgkthw
cythnvinanckdhtssnqyismgilvqtasgypmfktlkiqylsdglnrkscsiatvpd
gcamycyvstqletddyagsspptqkltllfyndtvtertisptglegnwatlvpgvgsg
iyfenklifpayggvlpnstlgvksareffrpvnpynpcsgpqqdldqralrsyfpsyfs
nrrvqsaflvcawnqilvtncelvvpsnnqtlmgaegrvllinnrllyyqrstswwpyel
lyeisftftnsgqssvnmswipiysftrpgsgncsgenvcptacvsgvyldpwpltpysh
qsginrnfyftgallnssttrvnptlyvsalnnlkvlapygnqglfasyttttcfqdtgd
asvycvyimelasnivgefqilpvltrltitg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jjmB (B:)
etggnqnqllstlatirtgkkqvsncstniplvndlrfinginkfiiedyathdfsighp
lnmpsfiptatspngctripsfslgkthwcythnvinanckdhtssnqyismgilvqtas
gypmfktlkiqylsdglnrkscsiatvpdgcamycyvstqletddyagsspptqkltllf
yndtvtertisptglegnwatlvpgvgsgiyfenklifpayggvlpnstlgvksareffr
pvnpynpcsgpqqdldqralrsyfpsyfsnrrvqsaflvcawnqilvtncelvvpsnnqt
lmgaegrvllinnrllyyqrstswwpyellyeisftftnsgqssvnmswipiysftrpgs
gncsgenvcptacvsgvyldpwpltpyshqsginrnfyftgallnssttrvnptlyvsal
nnlkvlapygnqglfasyttttcfqdtgdasvycvyimelasnivgefqilpvltrltit
gtkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjmB (B:)
iplvndlrfinginkfiiedyathdfsighplnmpsfiptatspngctripsfslgkthw
cythnvinanckdhtssnqyismgilvqtasgypmfktlkiqylsdglnrkscsiatvpd
gcamycyvstqletddyagsspptqkltllfyndtvtertisptglegnwatlvpgvgsg
iyfenklifpayggvlpnstlgvksareffrpvnpynpcsgpqqdldqralrsyfpsyfs
nrrvqsaflvcawnqilvtncelvvpsnnqtlmgaegrvllinnrllyyqrstswwpyel
lyeisftftnsgqssvnmswipiysftrpgsgncsgenvcptacvsgvyldpwpltpysh
qsginrnfyftgallnssttrvnptlyvsalnnlkvlapygnqglfasyttttcfqdtgd
asvycvyimelasnivgefqilpvltrltitg