PDB entry 6jjl

View 6jjl on RCSB PDB site
Description: crystal structure of the degp dodecamer with a modulator
Deposited on 2019-02-26, released 2020-09-02
The last revision was dated 2021-09-15, with a file datestamp of 2021-09-10.
Experiment type: XRAY
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'B':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'C':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'D':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'E':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'F':
    Compound: periplasmic serine endoprotease degp
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degP, htrA, ptd, b0161, JW0157
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0V0 (0-439)
      • conflict (201)
  • Chain 'G':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'H':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'I':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'J':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'K':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'L':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL
  • Chain 'M':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)
  • Chain 'N':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)
  • Chain 'O':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)
  • Chain 'P':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)
  • Chain 'Q':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)
  • Chain 'R':
    Compound: cys-tyr-arg-lys-leu
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JJL (0-4)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jjlA (A:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlA (A:)
aqqmpslapmlekvmpsvvsinveqkfmalgsgviidadkgyvvtnnhvvdnatvikvql
sdgrkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetv
tsgivsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnig
igfaipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpns
saakagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqs
fngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvlds
kpsvlalniqrgdstiyllmq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jjlB (B:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlB (B:)
qmpslapmlekvmpsvvsinvegstqkfmalgsgviidadkgyvvtnnhvvdnatvikvq
lsdgrkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglget
vtsgivsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggni
gigfaipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpn
ssaakagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqq
ssqnqvdsssifngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavk
niaelrkvldskpsvlalniqrgdstiyllmq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jjlC (C:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlC (C:)
qmpslapmlekvmpsvvsinvegstqkfmalgsgviidadkgyvvtnnhvvdnatvikvq
lsdgrkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglget
vtsgivsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggni
gigfaipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpn
ssaakagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqq
sfngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvld
skpsvlalniqrgdstiyllmq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jjlD (D:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlD (D:)
qmpslapmlekvmpsvvsinvegstqkfmalgsgviidadkgyvvtnnhvvdnatvikvq
lsdgrkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglget
vtsgivsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggni
gigfaipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpn
ssaakagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqq
svdsssifngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniae
lrkvldskpsvlalniqrgdstiyllmq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jjlE (E:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlE (E:)
qmpslapmlekvmpsvvsinvegstqkfmalgsgviidadkgyvvtnnhvvdnatvikvq
lsdgrkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglget
vtsgivsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggni
gigfaipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpn
ssaakagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqq
ssqsssifngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniae
lrkvldskpsvlalniqrgdstiyllmq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jjlF (F:)
aqqmpslapmlekvmpsvvsinvegsttvntprmprnfqqffgddspfcqegspfqsspf
cqggqggngggqqqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsdgrkfdakmv
gkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvtsgivsalgrs
glnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigigfaipsnmvk
nltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssaakagikagd
vitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqssqnqvdsssif
ngiegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldsk
psvlalniqrgdstiyllmq

    Sequence, based on observed residues (ATOM records):
    >6jjlF (F:)
qmpslapmlekvmpsvvsinveqkfmalgsgviidadkgyvvtnnhvvdnatvikvqlsd
grkfdakmvgkdprsdialiqiqnpknltaikmadsdalrvgdytvaignpfglgetvts
givsalgrsglnaenyenfiqtdaainrgnaggalvnlngeligintailapdggnigig
faipsnmvknltsqmveygqvkrgelgimgtelnselakamkvdaqrgafvsqvlpnssa
akagikagdvitslngkpissfaalraqvgtmpvgskltlgllrdgkqvnvnlelqqsfn
giegaemsnkgkdqgvvvnnvktgtpaaqiglkkgdviiganqqavkniaelrkvldskp
svlalniqrgdstiyllmq

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlG (G:)
cyrkl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlH (H:)
cyrkl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlI (I:)
cyrkl

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlJ (J:)
cyrkl

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlK (K:)
cyrkl

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlL (L:)
cyrkl

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlM (M:)
cyrkl

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlN (N:)
cyrkl

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlO (O:)
cyrkl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlP (P:)
cyrkl

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlQ (Q:)
cyrkl

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6jjlR (R:)
cyrkl