PDB entry 6jjd

View 6jjd on RCSB PDB site
Description: cryo-em structure of giant freshwater prawn macrobrachium rosenbergii nodavirus (mrnv) full vlp
Deposited on 2019-02-25, released 2019-05-01
The last revision was dated 2019-05-01, with a file datestamp of 2019-04-26.
Experiment type: EM
Resolution: 3.21 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Macrobrachium rosenbergii nodavirus [TaxId:222557]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: capsid protein
    Species: Macrobrachium rosenbergii nodavirus [TaxId:222557]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: capsid protein
    Species: Macrobrachium rosenbergii nodavirus [TaxId:222557]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jjdA (A:)
margkqnsnqiqnnsnangkrrkrnrrnrnpqtvpnfnpivakptvaplqtnirsarsdv
naitvlngsdflttvkvrgsnnlidsksrilvkqpisassflgtrisglsqfweryrwhk
aavryvpavpntlacqligyidtdplddpnvildvdqllrqatsqvgarqwnfsdtttip
livrrddqlyytgqdkenvrfsqqgvfyllqvttllnisgeaitndlisgslyldwvcgf
smpqinpspvevsqltynadtignwvpptelkqtytqditglkpnskfiiipymdrvsse
vlqkctitcnevdavgsisysdtsaikcdgyilfqansigeatftlvtdyqgavdpkpyq
yriiraivgnn

    Sequence, based on observed residues (ATOM records):
    >6jjdA (A:)
arsdvnaitvlngsdflttvkvrgsnnlidsksrilvkqpisassflgtrisglsqfwer
yrwhkaavryvpavpntlacqligyidtdplddpnvildvdqllrqatsqvgarqwnfsd
tttiplivrrddqlyytgqdkenvrfsqqgvfyllqvttllnisgeaitndlisgslyld
wvcgfsmpqinps

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jjdB (B:)
margkqnsnqiqnnsnangkrrkrnrrnrnpqtvpnfnpivakptvaplqtnirsarsdv
naitvlngsdflttvkvrgsnnlidsksrilvkqpisassflgtrisglsqfweryrwhk
aavryvpavpntlacqligyidtdplddpnvildvdqllrqatsqvgarqwnfsdtttip
livrrddqlyytgqdkenvrfsqqgvfyllqvttllnisgeaitndlisgslyldwvcgf
smpqinpspvevsqltynadtignwvpptelkqtytqditglkpnskfiiipymdrvsse
vlqkctitcnevdavgsisysdtsaikcdgyilfqansigeatftlvtdyqgavdpkpyq
yriiraivgnn

    Sequence, based on observed residues (ATOM records):
    >6jjdB (B:)
arsdvnaitvlngsdflttvkvrgsnnlidsksrilvkqpisassflgtrisglsqfwer
yrwhkaavryvpavpntlacqligyidtdplddpnvildvdqllrqatsqvgarqwnfsd
tttiplivrrddqlyytgqdkenvrfsqqgvfyllqvttllnisgeaitndlisgslyld
wvcgfsmpqinps

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jjdC (C:)
margkqnsnqiqnnsnangkrrkrnrrnrnpqtvpnfnpivakptvaplqtnirsarsdv
naitvlngsdflttvkvrgsnnlidsksrilvkqpisassflgtrisglsqfweryrwhk
aavryvpavpntlacqligyidtdplddpnvildvdqllrqatsqvgarqwnfsdtttip
livrrddqlyytgqdkenvrfsqqgvfyllqvttllnisgeaitndlisgslyldwvcgf
smpqinpspvevsqltynadtignwvpptelkqtytqditglkpnskfiiipymdrvsse
vlqkctitcnevdavgsisysdtsaikcdgyilfqansigeatftlvtdyqgavdpkpyq
yriiraivgnn

    Sequence, based on observed residues (ATOM records):
    >6jjdC (C:)
tvpnfnpivakptvaplqtnirsarsdvnaitvlngsdflttvkvrgsnnlidsksrilv
kqpisassflgtrisglsqfweryrwhkaavryvpavpntlacqligyidtdplddpnvi
ldvdqllrqatsqvgarqwnfsdtttiplivrrddqlyytgqdkenvrfsqqgvfyllqv
ttllnisgeaitndlisgslyldwvcgfsmpqinps