PDB entry 6jit

View 6jit on RCSB PDB site
Description: complex structure of an imine reductase at 2.05 angstrom resolution
Deposited on 2019-02-23, released 2020-02-26
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6-phosphogluconate dehydrogenase NAD-binding protein
    Species: Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) [TaxId:446470]
    Gene: Snas_4330
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3Q3R0
      • engineered mutation (122)
      • engineered mutation (177)
      • engineered mutation (227)
  • Chain 'B':
    Compound: 6-phosphogluconate dehydrogenase NAD-binding protein
    Species: Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) [TaxId:446470]
    Gene: Snas_4330
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3Q3R0
      • engineered mutation (122)
      • engineered mutation (177)
      • engineered mutation (227)
  • Chain 'C':
    Compound: 6-phosphogluconate dehydrogenase NAD-binding protein
    Species: Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) [TaxId:446470]
    Gene: Snas_4330
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3Q3R0
      • engineered mutation (122)
      • engineered mutation (177)
      • engineered mutation (227)
  • Heterogens: CL, LW7, NAP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jitA (A:)
mnskkspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteava
ssdlvilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiagg
vmipaptvgteaayvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllt
tlasvvhatalvsaagvdeaafapeairmvietgqmlaaeaetglelarnlasgnhpgel
atavmmgatadhivsaakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkkaa

    Sequence, based on observed residues (ATOM records):
    >6jitA (A:)
kkspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteavassd
lvilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiaggvmi
payvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllttlasvvhatal
vsaagvdeaafapeairmvietgqmlaetglelarnlasgnhpgelatavmmgatadhiv
saakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkka

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jitB (B:)
mnskkspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteava
ssdlvilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiagg
vmipaptvgteaayvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllt
tlasvvhatalvsaagvdeaafapeairmvietgqmlaaeaetglelarnlasgnhpgel
atavmmgatadhivsaakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkkaa

    Sequence, based on observed residues (ATOM records):
    >6jitB (B:)
kspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteavassdl
vilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiaggvmip
aayvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllttlasvvhatal
vsaagvdeaafapeairmvietgqmlaaeaetglelarnlasgnhpgelatavmmgatad
hivsaakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkka

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jitC (C:)
mnskkspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteava
ssdlvilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiagg
vmipaptvgteaayvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllt
tlasvvhatalvsaagvdeaafapeairmvietgqmlaaeaetglelarnlasgnhpgel
atavmmgatadhivsaakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkkaa

    Sequence, based on observed residues (ATOM records):
    >6jitC (C:)
kkspvtliglgpmgqamvrtllgqghpvtvwnrtpsraeplvvegarlaaspteavassd
lvilsltdyqamydilstaesalagrtivnlssddpdvtreaakwaakhgatfiaggvmi
paptvgteaayvfysgpksafdahepvlrhiggprflgedtglaqlyylahldvllttla
svvhatalvsaagvdeaafapeairmvietgqmlaaeaeelarnlasgnhpgelatavmm
gatadhivsaakgsgvdlvlpeavkslydrtvaaghgkdswtamyeiikkka