PDB entry 6jim

View 6jim on RCSB PDB site
Description: viral helicase protein
Deposited on 2019-02-22, released 2019-04-10
The last revision was dated 2019-05-22, with a file datestamp of 2019-05-17.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Helicase
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JIM (0-End)
  • Chain 'B':
    Compound: Helicase
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JIM (0-End)
  • Chain 'C':
    Compound: RNA (5'-r(p*up*up*up*up*up)-3')
    Species: Chikungunya virus, synthetic [TaxId:37124]
  • Chain 'D':
    Compound: RNA (5'-r(p*up*up*up*up*up)-3')
    Species: Chikungunya virus, synthetic [TaxId:37124]
  • Heterogens: ADP, MG, AL, F, CL, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jimA (A:)
giietprgaikvtaqptdhvvgeylvlspqtvlrsqklslihalaeqvktcthngragry
aveaydgrvlvpsgyaispedfqslsesatmvynerefvnrklhhiamhgpalntdeesy
elvraerteheyvydvdqrrcckkeeaaglvlvgdltnppyhefayeglkirpacpykia
vigvfgvpgsgksaiiknlvtrqdlvtsgkkencqeittdvmrqrgleisartvdsllln
gcnrpvdvlyvdeafachsgtllalialvrprqkvvlcgdpkqcgffnmmqmkvnynhni
ctqvyhksisrrctlpvtaivsslhyegkmrttneynkpivvdttgstkpdpgdlvltcf
rgwvkqlqidyrgyevmtaaasqgltrkgvyavrqkvnenplyastsehvnvlltrtegk
lvwktlsgdpwiktlqnppkgnfkatikewevehasimagicshq

    Sequence, based on observed residues (ATOM records):
    >6jimA (A:)
giietprgaikvtaqptdhvvgeylvlspqtvlrsqklslihalaeqvktcthngydgrv
lvpsgyaispedfqslsesatmvynerefvnrklhhiamhgpalntdeesyelvraerte
heyvydvdqrrcckkeeaaglvlvgdltnppyhefayeglkirpacpykiavigvfgvpg
sgksaiiknlvtrqdlvtsgkkencqeittdvmrqrgleisartvdslllngcnrpvdvl
yvdeafachsgtllalialvrprqkvvlcgdpkqcgffnmmqmkvnynhnictqvyhksi
srrctlpvtaivsslhyegkmrttneynkpivvdttgstkpdpgdlvltcfrgwvkqlqi
dyrgyevmtaaasqgltrkgvyavrqkvnenplyastsehvnvlltrtegklvwktlsgd
pwiktlqnppkgnfkatikewevehasimagics

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jimB (B:)
giietprgaikvtaqptdhvvgeylvlspqtvlrsqklslihalaeqvktcthngragry
aveaydgrvlvpsgyaispedfqslsesatmvynerefvnrklhhiamhgpalntdeesy
elvraerteheyvydvdqrrcckkeeaaglvlvgdltnppyhefayeglkirpacpykia
vigvfgvpgsgksaiiknlvtrqdlvtsgkkencqeittdvmrqrgleisartvdsllln
gcnrpvdvlyvdeafachsgtllalialvrprqkvvlcgdpkqcgffnmmqmkvnynhni
ctqvyhksisrrctlpvtaivsslhyegkmrttneynkpivvdttgstkpdpgdlvltcf
rgwvkqlqidyrgyevmtaaasqgltrkgvyavrqkvnenplyastsehvnvlltrtegk
lvwktlsgdpwiktlqnppkgnfkatikewevehasimagicshq

    Sequence, based on observed residues (ATOM records):
    >6jimB (B:)
giietprgaikvtaqptdhvvgeylvlspqtvlrsqklslihalaeqvktcthnaydgrv
lvpsgyaispedfqslsesatmvynerefvnrklhhiamhgpalntdeesyelvraerte
heyvydvdqrrcckkeeaaglvlvgdltnppyhefayeglkirpacpykiavigvfgvpg
sgksaiiknlvtrqdlvtsgkkencqeittdvmrqrgleisartvdslllngcnrpvdvl
yvdeafachsgtllalialvrprqkvvlcgdpkqcgffnmmqmkvnynhnictqvyhksi
srrctlpvtaivsslhyegkmrttneynkpivvdttgstkpdpgdlvltcfrgwvkqlqi
dyrgyevmtaaasqgltrkgvyavrqkvnenplyastsehvnvlltrtegklvwktlsgd
pwiktlqnppkgnfkatikewevehasimagicsh

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.