PDB entry 6ji2

View 6ji2 on RCSB PDB site
Description: crystal structure of archaeal ribosomal protein ap1, apelota, and gtp- bound aef1a complex
Deposited on 2019-02-20, released 2019-11-13
The last revision was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Elongation factor 1-alpha
    Species: Aeropyrum pernix K1 [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein pelota homolog
    Species: Aeropyrum pernix K1 [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YAZ5 (20-End)
      • expression tag (18-19)
  • Chain 'E':
    Compound: Elongation factor 1-alpha
    Species: Aeropyrum pernix K1 [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Protein pelota homolog
    Species: Aeropyrum pernix K1 [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YAZ5 (20-End)
      • expression tag (18-19)
  • Chain 'X':
    Compound: Archaeal ribosomal stalk protein aP1
    Species: Aeropyrum pernix K1, synthetic [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JI2 (Start-16)
  • Heterogens: GTP, MG, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ji2A (A:)
gshmaekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfaw
ildkmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsa
rkgefeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfm
kglgyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripv
qnvysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigf
avrgvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssr
iieikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnr
tvgigivtdvkpakvdikaklargsgc

    Sequence, based on observed residues (ATOM records):
    >6ji2A (A:)
kphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkmk
eerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgefe
agmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgyq
vdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvysi
pgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgvs
ksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieika
kldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgigi
vtdvkpakvdik

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ji2B (B:)
mgsshhhhhhssglvprgshmrvevldnkrrivrlrpeseedlwllritlrpgdvvrirt
srdvpvgsgrkervvmtlrirldsiefqpftgklrisgivvegpdefgvkgrrhstavsi
gtwlvverdkgwseqelerlasgrargtaviaavdydefalavlaghgmkiledtsarlp
gkddpsreqevekyvdraakriveeaarhrspiaviagpgqlktsvaekvqrampslkva
tvdtsmggvagvrealrresvtrilrelsiveaegvleeflrriaksrdtvaytpgevla
varmgavdtvllvdtllhspddavreavdealrlvesmggrviiipgdspagerlvsfgg
viallrypvpqearrl

    Sequence, based on observed residues (ATOM records):
    >6ji2B (B:)
shmrvevldnkrrivrlrpeseedlwllritlrpgdvvrirtsrdvpvgsgrkervvmtl
rirldsiefqpftgklrisgivvegpdefgvkgrrhstavsigtwlvverdkgwseqele
rlasgrargtaviaavdydefalavlaghgmkiledtsarlpgkddpsreqevekyvdra
akriveeaarhrspiaviagpgqlktsvaekvqrampslkvatvdtsmggvagvrealrr
esvtrilrelsiveaegvleeflrriaksrdtvaytpgevlavarmgavdtvllvdtllh
spddavreavdealrlvesmggrviiipgdspagerlvsfggviallrypvpqearr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ji2E (E:)
gshmaekphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfaw
ildkmkeerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsa
rkgefeagmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfm
kglgyqvdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripv
qnvysipgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigf
avrgvsksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssr
iieikakldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnr
tvgigivtdvkpakvdikaklargsgc

    Sequence, based on observed residues (ATOM records):
    >6ji2E (E:)
kphmnlvvighvdhgkstlvghllyrlgyieekklkeleeqaksrgkesfkfawildkmk
eerergitidltfmkfetkkyvftiidapghrdfvknmitgasqadaailvvsarkgefe
agmstegqtrehlllartmgieqiivavnkmdapdvnydqkryefvvsvlkkfmkglgyq
vdkipfipvsawkgdnlierspnmpwyngptlvealdqlqppakpvdkplripvqnvysi
pgagtvpvgrvetgvlrvgdkvvfmppgvvgevrsiemhyqqlqqaepgdnigfavrgvs
ksdikrgdvaghldkpptvaeefearifviwhpsaitvgytpvihvhtasvssriieika
kldpktgqvveqnpqflkagdaaivrfkpvkplvvekfseipqlgrfamrdmnrtvgigi
vtdvkpakvdik

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ji2F (F:)
mgsshhhhhhssglvprgshmrvevldnkrrivrlrpeseedlwllritlrpgdvvrirt
srdvpvgsgrkervvmtlrirldsiefqpftgklrisgivvegpdefgvkgrrhstavsi
gtwlvverdkgwseqelerlasgrargtaviaavdydefalavlaghgmkiledtsarlp
gkddpsreqevekyvdraakriveeaarhrspiaviagpgqlktsvaekvqrampslkva
tvdtsmggvagvrealrresvtrilrelsiveaegvleeflrriaksrdtvaytpgevla
varmgavdtvllvdtllhspddavreavdealrlvesmggrviiipgdspagerlvsfgg
viallrypvpqearrl

    Sequence, based on observed residues (ATOM records):
    >6ji2F (F:)
shmrvevldnkrrivrlrpeseedlwllritlrpgdvvrirtsrdvpvgsgrkervvmtl
rirldsiefqpftgklrisgivvegpdefgvkgrrhstavsigtwlvverdkgwseqele
rlasgrargtaviaavdydefalavlaghgmkiledtsarlpgkddpsreqevekyvdra
akriveeaarhrspiaviagpgqlktsvaekvqrampslkvatvdtsmggvagvrealrr
esvtrilrelsiveaegvleeflrriaksrdtvaytpgevlavarmgavdtvllvdtllh
spddavreavdealrlvesmggrviiipgdspagerlvsfggviallrypvpqearr

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6ji2X (X:)
kkeeevdlsglsgmfgf

    Sequence, based on observed residues (ATOM records):
    >6ji2X (X:)
sglsgmfgf