PDB entry 6ji1

View 6ji1 on RCSB PDB site
Description: tetrameric peptso2 incorporated in salipro nano particle
Deposited on 2019-02-19, released 2019-05-15
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Proton:oligopeptide symporter POT family
    Species: Shewanella oneidensis MR-1 [TaxId:211586]
    Gene: SO_1277
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Proton:oligopeptide symporter POT family
    Species: Shewanella oneidensis MR-1 [TaxId:211586]
    Gene: SO_1277
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Proton:oligopeptide symporter POT family
    Species: Shewanella oneidensis MR-1 [TaxId:211586]
    Gene: SO_1277
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Proton:oligopeptide symporter POT family
    Species: Shewanella oneidensis MR-1 [TaxId:211586]
    Gene: SO_1277
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ji1A (A:)
mtlgtnqvskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaal
iyvspaiggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglf
kpnagnlvrkiyegddskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwha
afavccvgilvglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiiley
edvarvfvyaagvavlgiffhlirtsepseragliaaliltvqtvfffifyqqmstslal
falrnvdwdfqvfgthlwtwspaqfqalnpiwimvlspvlawsyswagrnnkdfsiaakf
algfavvaigffiygfagqfavngktsswvmiwgyasyslgellvsglglamiaryvpar
mggfmmgayfvasgisqylggvvanfasvpqdlvdplqtlpvytnlfnklgvaavvctii
alavlplmrrlteshhahssiennaaaslrdvkaeqlessgenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ji1A (A:)
vskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaaliyvspai
ggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglfkpnagnl
vrkiyeskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwhaafavccvgil
vglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiileyedvarvfvya
agvavlgiffhlirtseragliaaliltvqtvfffifyqqmstslalfalrnvdwdfqvf
gthlwtwspaqfqalnpiwimvlspvlawsysiaakfalgfavvaigffiygfagqfavn
gktsswvmiwgyasyslgellvsglglamimggfmmgayfvasgisqylggvvanfasvp
qdlvdplqtlpvytnlfnklgvaavvctiialavlplmrrlt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ji1B (B:)
mtlgtnqvskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaal
iyvspaiggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglf
kpnagnlvrkiyegddskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwha
afavccvgilvglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiiley
edvarvfvyaagvavlgiffhlirtsepseragliaaliltvqtvfffifyqqmstslal
falrnvdwdfqvfgthlwtwspaqfqalnpiwimvlspvlawsyswagrnnkdfsiaakf
algfavvaigffiygfagqfavngktsswvmiwgyasyslgellvsglglamiaryvpar
mggfmmgayfvasgisqylggvvanfasvpqdlvdplqtlpvytnlfnklgvaavvctii
alavlplmrrlteshhahssiennaaaslrdvkaeqlessgenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ji1B (B:)
vskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaaliyvspai
ggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglfkpnagnl
vrkiyeskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwhaafavccvgil
vglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiileyedvarvfvya
agvavlgiffhlirtseragliaaliltvqtvfffifyqqmstslalfalrnvdwdfqvf
gthlwtwspaqfqalnpiwimvlspvlawsysiaakfalgfavvaigffiygfagqfavn
gktsswvmiwgyasyslgellvsglglamimggfmmgayfvasgisqylggvvanfasvp
qdlvdplqtlpvytnlfnklgvaavvctiialavlplmrrlt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ji1C (C:)
mtlgtnqvskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaal
iyvspaiggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglf
kpnagnlvrkiyegddskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwha
afavccvgilvglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiiley
edvarvfvyaagvavlgiffhlirtsepseragliaaliltvqtvfffifyqqmstslal
falrnvdwdfqvfgthlwtwspaqfqalnpiwimvlspvlawsyswagrnnkdfsiaakf
algfavvaigffiygfagqfavngktsswvmiwgyasyslgellvsglglamiaryvpar
mggfmmgayfvasgisqylggvvanfasvpqdlvdplqtlpvytnlfnklgvaavvctii
alavlplmrrlteshhahssiennaaaslrdvkaeqlessgenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ji1C (C:)
vskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaaliyvspai
ggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglfkpnagnl
vrkiyeskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwhaafavccvgil
vglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiileyedvarvfvya
agvavlgiffhlirtseragliaaliltvqtvfffifyqqmstslalfalrnvdwdfqvf
gthlwtwspaqfqalnpiwimvlspvlawsysiaakfalgfavvaigffiygfagqfavn
gktsswvmiwgyasyslgellvsglglamimggfmmgayfvasgisqylggvvanfasvp
qdlvdplqtlpvytnlfnklgvaavvctiialavlplmrrlt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ji1D (D:)
mtlgtnqvskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaal
iyvspaiggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglf
kpnagnlvrkiyegddskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwha
afavccvgilvglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiiley
edvarvfvyaagvavlgiffhlirtsepseragliaaliltvqtvfffifyqqmstslal
falrnvdwdfqvfgthlwtwspaqfqalnpiwimvlspvlawsyswagrnnkdfsiaakf
algfavvaigffiygfagqfavngktsswvmiwgyasyslgellvsglglamiaryvpar
mggfmmgayfvasgisqylggvvanfasvpqdlvdplqtlpvytnlfnklgvaavvctii
alavlplmrrlteshhahssiennaaaslrdvkaeqlessgenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ji1D (D:)
vskthsfmtvslielwerfgyygmqalivyfmvqrlgfddsranlvwsacaaliyvspai
ggwvgdkilgtkrtmllgagilsvgyalmtvptentwfmfsalgvivvgnglfkpnagnl
vrkiyeskidsaftiyymavnvgstfsmlltpwikdyvnaqygnefgwhaafavccvgil
vglgnyalmhkslanygsepdtrpvnkkslaivlalaalsvvasaiileyedvarvfvya
agvavlgiffhlirtseragliaaliltvqtvfffifyqqmstslalfalrnvdwdfqvf
gthlwtwspaqfqalnpiwimvlspvlawsysiaakfalgfavvaigffiygfagqfavn
gktsswvmiwgyasyslgellvsglglamimggfmmgayfvasgisqylggvvanfasvp
qdlvdplqtlpvytnlfnklgvaavvctiialavlplmrrlt