PDB entry 6jht

View 6jht on RCSB PDB site
Description: the cryo-em structure of hav bound to a neutralizing antibody-f9
Deposited on 2019-02-19, released 2020-03-18
The last revision was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: EM
Resolution: 3.79 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHT
  • Chain 'B':
    Compound: vp2
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHT
  • Chain 'C':
    Compound: vp3
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHT (0-245)
  • Chain 'D':
    Compound: Fab light chain
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHT (0-212)
  • Chain 'E':
    Compound: Fab heavy chain
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHT (0-220)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jhtA (A:)
vgddsggfsttvsteqnvpdpqvgittmrdlkgkanrgkmdvsgvqapvgaittiedpvl
akkvpetfpelkpgesrhtsdhmsiykfmgrshflctftfnsnnkeytfpitlsstsnpp
hglpstlrwffnlfqlyrgpldltiiitgatdvdgmawftpvglavdtpwvekesalqid
yktalgavrfntrrtgniqirlpwysylyavsgaldglgdktdstfglvsiqianynhsd
eylsfscylsvteqsefyfpraplnsnamlstesmmsr

    Sequence, based on observed residues (ATOM records):
    >6jhtA (A:)
ddsggfsttvsteqnvpdpqvgittmrmdvsgvqapvgaittiedpvlakkvpetfpelk
pgesrhtsdhmsiykfmgrshflctftfnsnnkeytfpitlsstsnpphglpstlrwffn
lfqlyrgpldltiiitgatdvdgmawftpvglavdtpwvekesalqidyktalgavrfnt
rrtgniqirlpwysylyavsgaldglgdktdstfglvsiqianynhsdeylsfscylsvt
eqsefyfpraplnsnamlst

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jhtB (B:)
dieeeqmiqsvdrtavtgasyftsvdqssvhtaevgshqieplktsvdkpgskktqgekf
flihsarwltthalfhevakldvvkllyneqfavqgllryhtyarfgieiqvqinptpfq
qgglicamvpgdqsygsiasltvyphgllncninnvvrikvpfiytrgayhfkdpqypvw
eltirvwselnigtgtsaytslnvlarftdlelhgltplstq

    Sequence, based on observed residues (ATOM records):
    >6jhtB (B:)
eqmiqsvdrtavtgasyftsvdqssvhtaevgshqieplktsvdkpgskktqgekfflih
sarwltthalfhevakldvvkllyneqfavqgllryhtyarfgieiqvqinptpfqqggl
icamvpgdqsygsiasltvyphgllncninnvvrikvpfiytrgayhfkdpqypvwelti
rvwselnigtgtsaytslnvlarftdlelhgltpls

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6jhtC (C:)
mmrnetrvsttenvvnlsnyedarakmsfaldqedwksdpsqgggikithfttwtsiptl
aaqfpfnasdsvgqqikvipvdpyffqmtntnpdqkcitalasicqmfcfwrgdlvfdfq
vfptkyhsgrllfcfvpgnelidvtgitlkqattapcavmdiagvqstlrfrvpwisdtp
yrvnrytkeahqkgeytaigklivycynrltspsnvahhvrvnvylsainlecfaplyha
mdvttq

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6jhtD (D:)
divltqspaimsaspgekvtmtcsatsglsyihwyqqksgtspkrwiydtsklafgapar
fsgsgsgtsysltissmeaedaatyycqqwdvnpytfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jhtE (E:)
evklvesggglvkpggslklscaasaftittygmswvrqtpekrlewvatitaggsytyy
pdsvkgrftisrdnakntlylqmsslrsgdtamyycarkvtsvaeyyfdywgqgttltvs
spkttppsvyplapasastaasmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqs
dlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records):
    >6jhtE (E:)
evklvesggglvkpggslklscaasaftittygmswvrqtpekrlewvatitaggsytyy
pdsvkgrftisrdnakntlylqmsslrsgdtamyycarkvtsvaeyyfdywgqgttltvs
spkttppsvyplapaaasmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivpr