PDB entry 6jhs

View 6jhs on RCSB PDB site
Description: The cryo-EM structure of HAV bound to a neutralizing antibody-F7
Class: virus
Keywords: Icosahedral symmetry, neutralizing antibody, HAV, complex, VIRUS
Deposited on 2019-02-19, released 2020-03-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: EM
Resolution: 3.05 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHS
  • Chain 'B':
    Compound: vp2
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHS
  • Chain 'C':
    Compound: vp3
    Species: Human hepatitis A virus Hu/Australia/HM175/1976 [TaxId:12098]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHS (0-245)
  • Chain 'D':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHS (0-212)
    Domains in SCOPe 2.08: d6jhsd1, d6jhsd2
  • Chain 'E':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JHS (0-220)
    Domains in SCOPe 2.08: d6jhse_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jhsD (D:)
divltqspaimsaspgekvtmtcsaassvsyihwyqqksgtspkrwiydtsrlafgvptr
fsgsgsgtsysltissmeaedaatyycqqwstnpytfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6jhsE (E:)
evklvesggglvkpggslklscaasihtfncygmswvrqtpekglewvatidaassytyy
pdsvkgrftisrdnakntlylqmsslrsgdtamyycarrdnttaqyyfdywgqgttltvs
spkttppsvyplapasastaasmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqs
dlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >6jhsE (E:)
evklvesggglvkpggslklscaasihtfncygmswvrqtpekglewvatidaassytyy
pdsvkgrftisrdnakntlylqmsslrsgdtamyycarrdnttaqyyfdywgqgttltvs
spkttppsvyplapaaasmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivpr