PDB entry 6jhp

View 6jhp on RCSB PDB site
Description: crystal structure of the glycoside hydrolase family 36 alpha- galactosidase from paecilomyces thermophila
Deposited on 2019-02-18, released 2020-05-20
The last revision was dated 2020-05-20, with a file datestamp of 2020-05-15.
Experiment type: XRAY
Resolution: 2.56 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-galactosidase
    Species: Paecilomyces sp. 'thermophila' [TaxId:566408]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-galactosidase
    Species: Paecilomyces sp. 'thermophila' [TaxId:566408]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-galactosidase
    Species: Paecilomyces sp. 'thermophila' [TaxId:566408]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: alpha-galactosidase
    Species: Paecilomyces sp. 'thermophila' [TaxId:566408]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jhpA (A:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefqstsgsnaivvdgttfalhgagms
yvfhantttgdlitdhygasvsgalpsppepvvngwvgmigrtrrefpdqgrgdfripav
rirqtagyavsdlryqghevrdgkpglpglpatfgeagdvttlvvhlydnhsavaadlsy
svfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldllglrgdwareahrmrrrv
eygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnltytgsfsaqvekgsqgltr
aligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfhrlyrkhlirskyatldrp
pllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgnkyprtsdkaglgdwtpnp
drfpdglepvveritnlpvngtageklrfgiwvepemvnpnsslyrehpdwvlhagsypr
terrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnrgmhempstrtyheymlgl
yrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdntdgvdritiqfgtslayp
pstmgahlsavpnhqtsrtvplefrahvammggsfgleldpatlqddpevrrliklaekv
nplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgpnvnhaapwvrlqgldpea
rytvdgnatykgatlmnlglqftfdseygskvvflekq

    Sequence, based on observed residues (ATOM records):
    >6jhpA (A:)
naivvdgttfalhgagmsyvfhantttgdlitdhygasvsgalpsppepvvngwvgmigr
trrefpdqgrgdfripavrirqtagyavsdlryqghevrdgkpglpglpatfgeagdvtt
lvvhlydnhsavaadlsysvfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldl
lglrgdwareahrmrrrveygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnlt
ytgsfsaqvekgsqgltraligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfh
rlyrkhlirskyatldrppllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgn
kyprtsdkaglgdwtpnpdrfpdglepvveritnlpvngtageklrfgiwvepemvnpns
slyrehpdwvlhagsyprterrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnr
gmhempstrtyheymlglyrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdn
tdgvdritiqfgtslayppstmgahlsavpnhqtsrtvplefrahvammggsfgleldpa
tlqddpevrrliklaekvnplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgp
nvnhaapwvrlqgldpearytvdgnatykgatlmnlglqftfdseygskvvflekq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jhpB (B:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefqstsgsnaivvdgttfalhgagms
yvfhantttgdlitdhygasvsgalpsppepvvngwvgmigrtrrefpdqgrgdfripav
rirqtagyavsdlryqghevrdgkpglpglpatfgeagdvttlvvhlydnhsavaadlsy
svfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldllglrgdwareahrmrrrv
eygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnltytgsfsaqvekgsqgltr
aligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfhrlyrkhlirskyatldrp
pllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgnkyprtsdkaglgdwtpnp
drfpdglepvveritnlpvngtageklrfgiwvepemvnpnsslyrehpdwvlhagsypr
terrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnrgmhempstrtyheymlgl
yrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdntdgvdritiqfgtslayp
pstmgahlsavpnhqtsrtvplefrahvammggsfgleldpatlqddpevrrliklaekv
nplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgpnvnhaapwvrlqgldpea
rytvdgnatykgatlmnlglqftfdseygskvvflekq

    Sequence, based on observed residues (ATOM records):
    >6jhpB (B:)
naivvdgttfalhgagmsyvfhantttgdlitdhygasvsgalpsppepvvngwvgmigr
trrefpdqgrgdfripavrirqtagyavsdlryqghevrdgkpglpglpatfgeagdvtt
lvvhlydnhsavaadlsysvfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldl
lglrgdwareahrmrrrveygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnlt
ytgsfsaqvekgsqgltraligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfh
rlyrkhlirskyatldrppllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgn
kyprtsdkaglgdwtpnpdrfpdglepvveritnlpvngtageklrfgiwvepemvnpns
slyrehpdwvlhagsyprterrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnr
gmhempstrtyheymlglyrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdn
tdgvdritiqfgtslayppstmgahlsavpnhqtsrtvplefrahvammggsfgleldpa
tlqddpevrrliklaekvnplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgp
nvnhaapwvrlqgldpearytvdgnatykgatlmnlglqftfdseygskvvflekq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jhpC (C:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefqstsgsnaivvdgttfalhgagms
yvfhantttgdlitdhygasvsgalpsppepvvngwvgmigrtrrefpdqgrgdfripav
rirqtagyavsdlryqghevrdgkpglpglpatfgeagdvttlvvhlydnhsavaadlsy
svfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldllglrgdwareahrmrrrv
eygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnltytgsfsaqvekgsqgltr
aligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfhrlyrkhlirskyatldrp
pllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgnkyprtsdkaglgdwtpnp
drfpdglepvveritnlpvngtageklrfgiwvepemvnpnsslyrehpdwvlhagsypr
terrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnrgmhempstrtyheymlgl
yrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdntdgvdritiqfgtslayp
pstmgahlsavpnhqtsrtvplefrahvammggsfgleldpatlqddpevrrliklaekv
nplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgpnvnhaapwvrlqgldpea
rytvdgnatykgatlmnlglqftfdseygskvvflekq

    Sequence, based on observed residues (ATOM records):
    >6jhpC (C:)
naivvdgttfalhgagmsyvfhantttgdlitdhygasvsgalpsppepvvngwvgmigr
trrefpdqgrgdfripavrirqtagyavsdlryqghevrdgkpglpglpatfgeagdvtt
lvvhlydnhsavaadlsysvfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldl
lglrgdwareahrmrrrveygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnlt
ytgsfsaqvekgsqgltraligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfh
rlyrkhlirskyatldrppllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgn
kyprtsdkaglgdwtpnpdrfpdglepvveritnlpvngtageklrfgiwvepemvnpns
slyrehpdwvlhagsyprterrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnr
gmhempstrtyheymlglyrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdn
tdgvdritiqfgtslayppstmgahlsavpnhqtsrtvplefrahvammggsfgleldpa
tlqddpevrrliklaekvnplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgp
nvnhaapwvrlqgldpearytvdgnatykgatlmnlglqftfdseygskvvflekq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jhpD (D:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefqstsgsnaivvdgttfalhgagms
yvfhantttgdlitdhygasvsgalpsppepvvngwvgmigrtrrefpdqgrgdfripav
rirqtagyavsdlryqghevrdgkpglpglpatfgeagdvttlvvhlydnhsavaadlsy
svfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldllglrgdwareahrmrrrv
eygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnltytgsfsaqvekgsqgltr
aligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfhrlyrkhlirskyatldrp
pllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgnkyprtsdkaglgdwtpnp
drfpdglepvveritnlpvngtageklrfgiwvepemvnpnsslyrehpdwvlhagsypr
terrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnrgmhempstrtyheymlgl
yrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdntdgvdritiqfgtslayp
pstmgahlsavpnhqtsrtvplefrahvammggsfgleldpatlqddpevrrliklaekv
nplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgpnvnhaapwvrlqgldpea
rytvdgnatykgatlmnlglqftfdseygskvvflekq

    Sequence, based on observed residues (ATOM records):
    >6jhpD (D:)
naivvdgttfalhgagmsyvfhantttgdlitdhygasvsgalpsppepvvngwvgmigr
trrefpdqgrgdfripavrirqtagyavsdlryqghevrdgkpglpglpatfgeagdvtt
lvvhlydnhsavaadlsysvfpefdavvrsvnitnkgngnitiehlasmsvdfpfedldl
lglrgdwareahrmrrrveygvqgfgsstgysshlhnpffvlahpsttesqgeawgfnlt
ytgsfsaqvekgsqgltraligfnpdqlswtlgpgetltspecvsvyssdgiggmsrkfh
rlyrkhlirskyatldrppllnswegvyfdynqtgierlarqsaalgirlfvmddgwfgn
kyprtsdkaglgdwtpnpdrfpdglepvveritnlpvngtageklrfgiwvepemvnpns
slyrehpdwvlhagsyprterrnqlvlnlalpevqdfiidfmtnllnsadisyvkwdnnr
gmhempstrtyheymlglyrvldtlsarfpdvlwegcasgggrfdagilhyfpqiwtsdn
tdgvdritiqfgtslayppstmgahlsavpnhqtsrtvplefrahvammggsfgleldpa
tlqddpevrrliklaekvnplvingdlyrlrlpeesqwpaalfvaedgsqavlfyfqvgp
nvnhaapwvrlqgldpearytvdgnatykgatlmnlglqftfdseygskvvflekq