PDB entry 6jfz

View 6jfz on RCSB PDB site
Description: gluk3 receptor complex with ubp310
Deposited on 2019-02-13, released 2019-07-24
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 7.6 Å
R-factor: N/A
AEROSPACI score: -0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-808)
      • engineered mutation (85)
      • see sequence details (258)
      • engineered mutation (304)
      • see sequence details (309)
      • see sequence details (323)
      • engineered mutation (546)
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-808)
      • engineered mutation (85)
      • see sequence details (258)
      • engineered mutation (304)
      • see sequence details (309)
      • see sequence details (323)
      • engineered mutation (546)
  • Chain 'C':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-808)
      • engineered mutation (85)
      • see sequence details (258)
      • engineered mutation (304)
      • see sequence details (309)
      • see sequence details (323)
      • engineered mutation (546)
  • Chain 'D':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-808)
      • engineered mutation (85)
      • see sequence details (258)
      • engineered mutation (304)
      • see sequence details (309)
      • see sequence details (323)
      • engineered mutation (546)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jfzA (A:)
mphviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhds
featkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvn
lypdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpids
ddsrpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlep
yrysgvnltgfrilnvdnphvsaivekwsmerlqaapraesglldgvmmtdaallydavh
ivsvtyqrapqmtvnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfd
ldiislkedglekvgvwspadglnitevakgrgpnvtdsltnrslivttlleepfvmfrk
sdrtlygndrfegycidllkelahilgfsyeirlvedgkygaqddkgqwngmvkelidhk
adlavapltithvrekaidfskpfmtlgvsilyrkpngtnpsvfsflnplspdiwmyvll
aylgvsvvlfviarfspyewydahpcnpgsevvennftllnsfwfgmgslmqqgselmpk
alstriiggiwwfftliiissytanlaafltvermespidsaddlakqtkieygavkdga
tmtffkkskistfekmwafmsskpsalvknneegiqrtltadyallmesttieyitqrnc
nltqigglidskgygigtpmgspyrdkitiailqlqeedklhimkekwwrgsgcpeeenk
easalgiqkiggifivlaaglvlsvlvav

    Sequence, based on observed residues (ATOM records):
    >6jfzA (A:)
hviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhdsfe
atkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvnly
pdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpidsdd
srpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlepyr
ysgvnltgfrilnvdnphvsaivekwsmerlqgvmmtdaallydavhivsvtyqrapqmt
vnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfdldiislkedglek
vgvwspadglnitnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgf
syeirlvedgkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlg
vsilyrkpngtnpsvfsflnplspdiwmyvllaylgvsvvlfviarlstriiggiwwfft
liiissytanlaafltvermespidsaddlakqtkieygavkdgatmtffkkskistfek
mwafmsskpsalvknneegiqrtltadyallmesttieyitqrncnltqigglidskgyg
igtpmgspyrdkitiailqlqeedklhimkekwwrgqkiggifivlaaglvlsvlvav

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jfzB (B:)
mphviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhds
featkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvn
lypdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpids
ddsrpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlep
yrysgvnltgfrilnvdnphvsaivekwsmerlqaapraesglldgvmmtdaallydavh
ivsvtyqrapqmtvnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfd
ldiislkedglekvgvwspadglnitevakgrgpnvtdsltnrslivttlleepfvmfrk
sdrtlygndrfegycidllkelahilgfsyeirlvedgkygaqddkgqwngmvkelidhk
adlavapltithvrekaidfskpfmtlgvsilyrkpngtnpsvfsflnplspdiwmyvll
aylgvsvvlfviarfspyewydahpcnpgsevvennftllnsfwfgmgslmqqgselmpk
alstriiggiwwfftliiissytanlaafltvermespidsaddlakqtkieygavkdga
tmtffkkskistfekmwafmsskpsalvknneegiqrtltadyallmesttieyitqrnc
nltqigglidskgygigtpmgspyrdkitiailqlqeedklhimkekwwrgsgcpeeenk
easalgiqkiggifivlaaglvlsvlvav

    Sequence, based on observed residues (ATOM records):
    >6jfzB (B:)
hviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhdsfe
atkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvnly
pdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpidsdd
srpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlepyr
ysgvnltgfrilnvdnphvsaivekwsmerdgvmmtdaallydavhivsvtyqrapqmtv
nslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfdldiislkedglekv
gvwspadglnitnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfs
yeirlvedgkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgv
silyrkpngtnpsvfsflnplspdiwmyvllaylgvsvvlfviaralstriiggiwwfft
liiissytanlaafltvepidsaddlakqtkieygavkdgatmtffkkskistfekmwaf
msskpsalvknneegiqrtltadyallmesttieyitqrncnltqigglidskgygigtp
mgspyrdkitiailqlqeedklhimkekwwrgqkiggifivlaaglvlsvlvav

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jfzC (C:)
mphviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhds
featkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvn
lypdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpids
ddsrpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlep
yrysgvnltgfrilnvdnphvsaivekwsmerlqaapraesglldgvmmtdaallydavh
ivsvtyqrapqmtvnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfd
ldiislkedglekvgvwspadglnitevakgrgpnvtdsltnrslivttlleepfvmfrk
sdrtlygndrfegycidllkelahilgfsyeirlvedgkygaqddkgqwngmvkelidhk
adlavapltithvrekaidfskpfmtlgvsilyrkpngtnpsvfsflnplspdiwmyvll
aylgvsvvlfviarfspyewydahpcnpgsevvennftllnsfwfgmgslmqqgselmpk
alstriiggiwwfftliiissytanlaafltvermespidsaddlakqtkieygavkdga
tmtffkkskistfekmwafmsskpsalvknneegiqrtltadyallmesttieyitqrnc
nltqigglidskgygigtpmgspyrdkitiailqlqeedklhimkekwwrgsgcpeeenk
easalgiqkiggifivlaaglvlsvlvav

    Sequence, based on observed residues (ATOM records):
    >6jfzC (C:)
hviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhdsfe
atkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvnly
pdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpidsdd
srpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlepyr
ysgvnltgfrilnvdnphvsaivekwsmerdgvmmtdaallydavhivsvtyqrapqmtv
nslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfdldiislkedglekv
gvwspadglnitnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfs
yeirlvedgkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgv
silyrkpngtnpsvfsflnplspdiwmyvllaylgvsvvlfviaralstriiggiwwfft
liiissytanlaafltvermespidsaddlakqtkieygavkdgatmtffkkskistfek
mwafmsskpsalvknneegiqrtltadyallmesttieyitqrncnltqigglidskgyg
igtpmgspyrdkitiailqlqeedklhimkekwwrgqkiggifivlaaglvlsvlvav

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jfzD (D:)
mphviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhds
featkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvn
lypdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpids
ddsrpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlep
yrysgvnltgfrilnvdnphvsaivekwsmerlqaapraesglldgvmmtdaallydavh
ivsvtyqrapqmtvnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfd
ldiislkedglekvgvwspadglnitevakgrgpnvtdsltnrslivttlleepfvmfrk
sdrtlygndrfegycidllkelahilgfsyeirlvedgkygaqddkgqwngmvkelidhk
adlavapltithvrekaidfskpfmtlgvsilyrkpngtnpsvfsflnplspdiwmyvll
aylgvsvvlfviarfspyewydahpcnpgsevvennftllnsfwfgmgslmqqgselmpk
alstriiggiwwfftliiissytanlaafltvermespidsaddlakqtkieygavkdga
tmtffkkskistfekmwafmsskpsalvknneegiqrtltadyallmesttieyitqrnc
nltqigglidskgygigtpmgspyrdkitiailqlqeedklhimkekwwrgsgcpeeenk
easalgiqkiggifivlaaglvlsvlvav

    Sequence, based on observed residues (ATOM records):
    >6jfzD (D:)
hviriggifeyadgpnaqvmnaeehafrfsaniinrnrtllpnttltydiqrihfhdsfe
atkkacdqlalgvvaifgpsqgsttnavqsicnalevphiqlrwkhhpldnkdtfyvnly
pdyaslshaildlvqslkwrsatvvyddstglirlqelimapsrynirlkirqlpidsdd
srpllkemkrgrefriifdcshtmaaqilkqamamgmmteyyhfifttldlyaldlepyr
ysgvnltgfrilnvdnphvsaivekwsmerlqgvmmtdaallydavhivsvtyqrapqmt
vnslqchrhkawrfggrfmnfikeaqwegltgrivfnktsglrtdfdldiislkedglek
vgvwspadglnitnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgf
syeirlvedgkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlg
vsilyrkpngtnpsvfsflnplspdiwmyvllaylgvsvvlfviaralstriiggiwwff
tliiissytanlaafltvermespidsaddlakqtkieygavkdgatmtffkkskistfe
kmwafmsskpsalvknneegiqrtltadyallmesttieyitqrncnltqigglidskgy
gigtpmgspyrdkitiailqlqeedklhimkekwwrgqkiggifivlaaglvlsvlvav