PDB entry 6jfi

View 6jfi on RCSB PDB site
Description: the symmetric-reconstructed cryo-em structure of zika virus-fabzk2b10 complex
Deposited on 2019-02-08, released 2019-04-10
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ZIKV structural protein E
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-500)
  • Chain 'B':
    Compound: strutural protein M
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ZIKV structural protein E
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-500)
  • Chain 'D':
    Compound: strutural protein M
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ZIKV structural protein E
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-500)
  • Chain 'F':
    Compound: strutural protein M
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: FabZK2B10 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-234)
  • Chain 'I':
    Compound: FabZK2B10 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-213)
  • Chain 'K':
    Compound: FabZK2B10 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-234)
  • Chain 'L':
    Compound: FabZK2B10 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JFI (0-213)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiA (A:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeatl
ggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnke
alvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrl
kgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlit
anpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkafeatvrgakr
mavlgdtawdfgsvggalnslgkgihqifgaafkslfggmswfsqiligtllmwlglntk
ngsislmclalggvliflsta

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiB (B:)
avtlpshstrklqtrsqtwlesreytkhlirvenwifrnpgfalaaaaiawllgsstsqk
viylvmilliapays

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiC (C:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeatl
ggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnke
alvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrl
kgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlit
anpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkafeatvrgakr
mavlgdtawdfgsvggalnslgkgihqifgaafkslfggmswfsqiligtllmwlglntk
ngsislmclalggvliflsta

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiD (D:)
avtlpshstrklqtrsqtwlesreytkhlirvenwifrnpgfalaaaaiawllgsstsqk
viylvmilliapays

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiE (E:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeatl
ggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnke
alvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrl
kgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlit
anpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkafeatvrgakr
mavlgdtawdfgsvggalnslgkgihqifgaafkslfggmswfsqiligtllmwlglntk
ngsislmclalggvliflsta

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiF (F:)
avtlpshstrklqtrsqtwlesreytkhlirvenwifrnpgfalaaaaiawllgsstsqk
viylvmilliapays

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiH (H:)
evqlvqsgaevkkpgasvkvsckasgytftsghtfpsydinwvrqatgqglewmgwmnpn
rgntgyaqkfqgrvtmtrntsintaymelsslrsedtavyycarvrsgtnygsyyyyyyg
mdvwgqgttvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgal
tsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiI (I:)
syeltqppsasgtpgqrvtiscsgsssnignnyvhwyqqlpgsapklliyrnnqrpsgvp
drfsgsksgtsgslaisglrsedeadyycaswddslsghwvfgggtkvtvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiK (K:)
evqlvqsgaevkkpgasvkvsckasgytftsghtfpsydinwvrqatgqglewmgwmnpn
rgntgyaqkfqgrvtmtrntsintaymelsslrsedtavyycarvrsgtnygsyyyyyyg
mdvwgqgttvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgal
tsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6jfiL (L:)
syeltqppsasgtpgqrvtiscsgsssnignnyvhwyqqlpgsapklliyrnnqrpsgvp
drfsgsksgtsgslaisglrsedeadyycaswddslsghwvfgggtkvtvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt