PDB entry 6jfd

View 6jfd on RCSB PDB site
Description: K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Class: hydrolase
Keywords: peptide deformylase, hydrolase
Deposited on 2019-02-08, released 2020-02-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-12, with a file datestamp of 2020-02-07.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jfda_
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jfdb_
  • Chain 'C':
    Compound: Peptide deformylase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jfdc_
  • Chain 'D':
    Compound: Peptide deformylase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jfdd_
  • Heterogens: K1U, NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jfdA (A:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgferserypdapavpptillnpritplddemeegwegclsvpglrgavsrhrriryqg
ldpqgqpidrsvegfharvvqhecdhligrlypsritdfskfgftevl

    Sequence, based on observed residues (ATOM records): (download) 
    >6jfdA (A:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgfepavpptillnpritplddemeegwegclsvpglrgavsrhrriryqgldpqgqpi
drsvegfharvvqhecdhligrlypsritdfskfgftevl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jfdB (B:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgferserypdapavpptillnpritplddemeegwegclsvpglrgavsrhrriryqg
ldpqgqpidrsvegfharvvqhecdhligrlypsritdfskfgftevl

    Sequence, based on observed residues (ATOM records): (download) 
    >6jfdB (B:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgfepavpptillnpritplddemeegwegclsvpglrgavsrhrriryqgldpqgqpi
drsvegfharvvqhecdhligrlypsritdfskfgftevl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6jfdC (C:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgferserypdapavpptillnpritplddemeegwegclsvpglrgavsrhrriryqg
ldpqgqpidrsvegfharvvqhecdhligrlypsritdfskfgftevl

    Sequence, based on observed residues (ATOM records): (download) 
    >6jfdC (C:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgfepavpptillnpritplddemeegwegclsvpglrgavsrhrriryqgldpqgqpi
drsvegfharvvqhecdhligrlypsritdfskfgftev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jfdD (D:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgferserypdapavpptillnpritplddemeegwegclsvpglrgavsrhrriryqg
ldpqgqpidrsvegfharvvqhecdhligrlypsritdfskfgftevl

    Sequence, based on observed residues (ATOM records): (download) 
    >6jfdD (D:)
ireilkmgderllriaqpvpsellgseelqrliddmfetmhhvggvglaapqigvdlqlv
ifgfepavpptillnpritplddemeegwegclsvpglrgavsrhrriryqgldpqgqpi
drsvegfharvvqhecdhligrlypsritdfskfgftevl