PDB entry 6jf8

View 6jf8 on RCSB PDB site
Description: K4U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Class: hydrolase
Keywords: peptide deformylase, hydrolase
Deposited on 2019-02-08, released 2020-02-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-12, with a file datestamp of 2020-02-07.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Acinetobacter baumannii [TaxId:470]
    Gene: def, C3415_07350, IX87_00730
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jf8a_
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Acinetobacter baumannii [TaxId:470]
    Gene: def, C3415_07350, IX87_00730
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jf8b_
  • Chain 'C':
    Compound: Peptide deformylase
    Species: Acinetobacter baumannii [TaxId:470]
    Gene: def, C3415_07350, IX87_00730
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jf8c_
  • Chain 'D':
    Compound: Peptide deformylase
    Species: Acinetobacter baumannii [TaxId:470]
    Gene: def, C3415_07350, IX87_00730
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jf8d_
  • Heterogens: LHY, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jf8A (A:)
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpdergqveraemvkv
kyltlqgemvetvfqgfparivqhevdhlngilfveris

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jf8B (B:)
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpdergqveraemvkv
kyltlqgemvetvfqgfparivqhevdhlngilfveris

    Sequence, based on observed residues (ATOM records): (download) 
    >6jf8B (B:)
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpergqveraemvkvk
yltlqgemvetvfqgfparivqhevdhlngilfveris

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jf8C (C:)
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpdergqveraemvkv
kyltlqgemvetvfqgfparivqhevdhlngilfveris

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jf8D (D:)
svvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskr
viivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpdergqveraemvkv
kyltlqgemvetvfqgfparivqhevdhlngilfveris

    Sequence, based on observed residues (ATOM records): (download) 
    >6jf8D (D:)
vvlpvakrgedilkliaapvsanelnsnwlyqladamhatmlerngvgiaapqvyiskrv
iivasrpnprypdapemnavvmvnpeilefssemclgeegclsvpdergqveraemvkvk
yltlqgemvetvfqgfparivqhevdhlngilfveris