PDB entry 6je9

View 6je9 on RCSB PDB site
Description: crystal structure of nme1cas9-sgrna dimer mediated by double protein inhibitor acriic3 monomers
Deposited on 2019-02-04, released 2019-11-06
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 3.46 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated endonuclease Cas9
    Species: Neisseria meningitidis 8013 [TaxId:604162]
    Gene: cas9, NMV_1993
    Database cross-references and differences (RAF-indexed):
    • Uniprot C9X1G5 (Start-1081)
      • expression tag (1082)
  • Chain 'B':
    Compound: sgrna
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: CRISPR-associated endonuclease Cas9
    Species: Neisseria meningitidis 8013 [TaxId:604162]
    Gene: cas9, NMV_1993
    Database cross-references and differences (RAF-indexed):
    • Uniprot C9X1G5 (Start-1081)
      • expression tag (1082)
  • Chain 'D':
    Compound: sgrna
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: AcrIIC3
    Species: Neisseria meningitidis 8013 [TaxId:604162]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: AcrIIC3
    Species: Neisseria meningitidis 8013 [TaxId:604162]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6je9A (A:)
    maafkpnsinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslam
    arrlarsvrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldr
    kltplewsavllhlikhrgylsqrknegetadkelgallkgvagnahalqtgdfrtpael
    alnkfekesghirnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllm
    tqrpalsgdavqkmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdt
    eratlmdepyrkskltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisral
    ekeglkdkksplnlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkf
    vqislkalrrivplmeqgkrydeacaeiygdhygkknteekiylppipadeirnpvvlra
    lsqarkvingvvrrygsparihietarevgksfkdrkeiekrqeenrkdrekaaakfrey
    fpnfvgepkskdilklrlyeqqhgkclysgkeinlgrlnekgyveidhalpfsrtwddsf
    nnkvlvlgsenqnkgnqtpyeyfngkdnsrewqefkarvetsrfprskkqrillqkfded
    gfkernlndtryvnrflcqfvadrmrltgkgkkrvfasngqitnllrgfwglrkvraend
    rhhaldavvvacstvamqqkitrfvrykemnafdgktidketgevlhqkthfpqpweffa
    qevmirvfgkpdgkpefeeadtleklrtllaeklssrpeavheyvtplfvsrapnrkmsg
    qghmetvksakrldegvsvlrvpltqlklkdlekmvnrerepklyealkarleahkddpa
    kafaepfykydkagnrtqqvkavrveqvqktgvwvrnhngiadnatmvrvdvfekgdkyy
    lvpiyswqvakgilpdravvqgkdeedwqliddsfnfkfslhpndlvevitkkarmfgyf
    aschrgtgninirihdldhkigkngilegigvktalsfqkyqidelgkeirpcrlkkrpp
    vrsehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6je9A (A:)
    sinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslamarrlars
    vrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldrkltplew
    savllhlikhrgylsqegetadkelgallkgvagnahalqtgdfrtpaelalnkfekesg
    hirnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllmtqrpalsgda
    vqkmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdteratlmdepy
    rkskltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisralekeglkdkks
    plnlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkfvqislkalrr
    ivplmeqgkrydeacaeiygdteekiylppipadeirnpvvlralsqarkvingvvrryg
    sparihietarevgksfkdrkeiekrqeenrkdrekaaakfreyfpnfvgepkskdilkl
    rlyeqqhgkclysgkeinlgrlnekgyveidhalpfsrtwddsfnnkvlvlgsenqnkgn
    qtpyeyfngkdnsrewqefkarvetsrfprskkqrillqkfdedgfkernlndtryvnrf
    lcqfvadrmrltgkgkkrvfasngqitnllrgfwglrkvraendrhhaldavvvacstva
    mqqkitrfvrykemnafvlhqkthfpqpweffaqevmirvfgkpdgkpefeeadtleklr
    tllaeklssrpeavheyvtplfvsrapnrkmsgqghmetvksakrldegvsvlrvpltql
    klkdlekmvnrerepklyealkarleahkddpakafaepfykydkagnrtqqvkavrveq
    vqktgvwvrnhngiadnatmvrvdvfekgdkyylvpiyswqvakgilpdravvqgkdeed
    wqliddsfnfkfslhpndlvevitkkarmfgyfaschrgtgninirihdldhkigkngil
    egigvktalsfqkyqidelgkeirpcrlkkrppvrs
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6je9C (C:)
    maafkpnsinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslam
    arrlarsvrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldr
    kltplewsavllhlikhrgylsqrknegetadkelgallkgvagnahalqtgdfrtpael
    alnkfekesghirnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllm
    tqrpalsgdavqkmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdt
    eratlmdepyrkskltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisral
    ekeglkdkksplnlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkf
    vqislkalrrivplmeqgkrydeacaeiygdhygkknteekiylppipadeirnpvvlra
    lsqarkvingvvrrygsparihietarevgksfkdrkeiekrqeenrkdrekaaakfrey
    fpnfvgepkskdilklrlyeqqhgkclysgkeinlgrlnekgyveidhalpfsrtwddsf
    nnkvlvlgsenqnkgnqtpyeyfngkdnsrewqefkarvetsrfprskkqrillqkfded
    gfkernlndtryvnrflcqfvadrmrltgkgkkrvfasngqitnllrgfwglrkvraend
    rhhaldavvvacstvamqqkitrfvrykemnafdgktidketgevlhqkthfpqpweffa
    qevmirvfgkpdgkpefeeadtleklrtllaeklssrpeavheyvtplfvsrapnrkmsg
    qghmetvksakrldegvsvlrvpltqlklkdlekmvnrerepklyealkarleahkddpa
    kafaepfykydkagnrtqqvkavrveqvqktgvwvrnhngiadnatmvrvdvfekgdkyy
    lvpiyswqvakgilpdravvqgkdeedwqliddsfnfkfslhpndlvevitkkarmfgyf
    aschrgtgninirihdldhkigkngilegigvktalsfqkyqidelgkeirpcrlkkrpp
    vrsehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6je9C (C:)
    sinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslamarrlars
    vrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldrkltplew
    savllhlikhrgylsqetadkelgallkgvagnahalqtgdfrtpaelalnkfekesghi
    rnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllmtqrpalsgdavq
    kmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdteratlmdepyrk
    skltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisralekeglkdkkspl
    nlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkfvqislkalrriv
    plmeqgkrydeacaeiteekiylppipadeirnpvvlralsqarkvingvvrrygspari
    hietarevgksfkdrkeiekrqeenrkdrekaaakfreyfpnfvgepkskdilklrlyeq
    qhgkclysgkeinlgrlnekgyveidhalpfsrtwddsfnnkvlvlgsenqnkgnqtpye
    yfnsrewqefkarvetsrfprskkqrillqkfdedgfkernlndtryvnrflcqfvadrm
    rltgkgkkrvfasngqitnllrgfwglrkvraendrhhaldavvvacstvamqqkitrfv
    rykemnthfpqpweffaqevmirvfgkpdgkpefeeadtleklrtllaeklssrpeavhe
    yvtplfvsrapnrkmsgqghmetvksakrldegvsvlrvpltqlklkdlekmvnrerepk
    lyealkarleahkddpakafaepfyagnrtqqvkavrveqvqktgvwvrnhngiadnatm
    vrvdvfekgdkyylvpiyswqvakgilpdravvqgkdeedwqliddsfnfkfslhpndlv
    evitkkarmfgyfaschrgtgninirihdldhkigkngilegigvktalsfqkyqidelg
    keirpcrlkkrppvrs
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6je9E (E:)
    smfkraiiftsfngfekvsrtekrrlakiinarvsiideylrakdtnasldgqyraflfn
    despamteflaklkafaesctgisidaweieeseyvrlpverrdflaaangkeifki
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6je9F (F:)
    smfkraiiftsfngfekvsrtekrrlakiinarvsiideylrakdtnasldgqyraflfn
    despamteflaklkafaesctgisidaweieeseyvrlpverrdflaaangkeifki