PDB entry 6jdy

View 6jdy on RCSB PDB site
Description: Ligand complex structure of GH10 family xylanase XynAF1, soaking for 120 minutes
Class: hydrolase
Keywords: GH10 family, Thermophilic, Hydrolysis, Complex, HYDROLASE
Deposited on 2019-02-02, released 2020-05-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-xylanase
    Species: Aspergillus fumigatus Z5 [TaxId:1437362]
    Gene: Y699_04481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jdya_
  • Chain 'B':
    Compound: Beta-xylanase
    Species: Aspergillus fumigatus Z5 [TaxId:1437362]
    Gene: Y699_04481
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jdyb_
  • Heterogens: XYP, NAG, PEG, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6jdyA (A:)
    aglntaakakglkyfgsatdnpeltdsayvaqlsntddfgqitpgnsmkwdatepsqnsf
    sfangdavvnlankngqlmrchtlvwhsqlpnwvssgswtnatllaamknhitnvvthyk
    gkcyawdvvnealnedgtfrnsvfyqiigpayipiafataaaadpdvklyyndynieysg
    akataaqnivkmikaygakidgvglqahfivgstpsqsdlttvlkgytalgvevayteld
    irmqlpstaaklaqqstdfqgvaaacvsttgcvgvtiwdwtdkyswvpsvfqgygaplpw
    denyvkkpaydglmaglga
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6jdyB (B:)
    aglntaakakglkyfgsatdnpeltdsayvaqlsntddfgqitpgnsmkwdatepsqnsf
    sfangdavvnlankngqlmrchtlvwhsqlpnwvssgswtnatllaamknhitnvvthyk
    gkcyawdvvnealnedgtfrnsvfyqiigpayipiafataaaadpdvklyyndynieysg
    akataaqnivkmikaygakidgvglqahfivgstpsqsdlttvlkgytalgvevayteld
    irmqlpstaaklaqqstdfqgvaaacvsttgcvgvtiwdwtdkyswvpsvfqgygaplpw
    denyvkkpaydglmaglga