PDB entry 6jdq

View 6jdq on RCSB PDB site
Description: crystal structure of nme1cas9 in complex with sgrna
Deposited on 2019-02-02, released 2019-11-06
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated endonuclease Cas9
    Species: Neisseria meningitidis serogroup C (strain 8013) [TaxId:604162]
    Gene: cas9, NMV_1993
    Database cross-references and differences (RAF-indexed):
    • Uniprot C9X1G5 (Start-1081)
      • expression tag (1082)
  • Chain 'B':
    Compound: sgrna
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jdqA (A:)
    maafkpnsinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslam
    arrlarsvrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldr
    kltplewsavllhlikhrgylsqrknegetadkelgallkgvagnahalqtgdfrtpael
    alnkfekesghirnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllm
    tqrpalsgdavqkmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdt
    eratlmdepyrkskltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisral
    ekeglkdkksplnlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkf
    vqislkalrrivplmeqgkrydeacaeiygdhygkknteekiylppipadeirnpvvlra
    lsqarkvingvvrrygsparihietarevgksfkdrkeiekrqeenrkdrekaaakfrey
    fpnfvgepkskdilklrlyeqqhgkclysgkeinlgrlnekgyveidhalpfsrtwddsf
    nnkvlvlgsenqnkgnqtpyeyfngkdnsrewqefkarvetsrfprskkqrillqkfded
    gfkernlndtryvnrflcqfvadrmrltgkgkkrvfasngqitnllrgfwglrkvraend
    rhhaldavvvacstvamqqkitrfvrykemnafdgktidketgevlhqkthfpqpweffa
    qevmirvfgkpdgkpefeeadtleklrtllaeklssrpeavheyvtplfvsrapnrkmsg
    qghmetvksakrldegvsvlrvpltqlklkdlekmvnrerepklyealkarleahkddpa
    kafaepfykydkagnrtqqvkavrveqvqktgvwvrnhngiadnatmvrvdvfekgdkyy
    lvpiyswqvakgilpdravvqgkdeedwqliddsfnfkfslhpndlvevitkkarmfgyf
    aschrgtgninirihdldhkigkngilegigvktalsfqkyqidelgkeirpcrlkkrpp
    vrsehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6jdqA (A:)
    sinyilgldigiasvgwamveideeenpirlidlgvrvferaevpktgdslamarrlars
    vrrltrrrahrllrtrrllkregvlqaanfdenglikslpntpwqlraaaldrkltplew
    savllhlikhrgylsqnegetadkelgallkgvagnahalqtgdfrtpaelalnkfekes
    ghirnqrsdyshtfsrkdlqaelillfekqkefgnphvsgglkegietllmtqrpalsgd
    avqkmlghctfepaepkaakntytaerfiwltklnnlrileqgserpltdteratlmdep
    yrkskltyaqarkllgledtaffkglrygkdnaeastlmemkayhaisralekeglkdkk
    splnlspelqdeigtafslfktdeditgrlkdriqpeileallkhisfdkfvqislkalr
    rivplmeqgkrydeacaeiygdhteekiylppipadeirnpvvlralsqarkvingvvrr
    ygsparihietarevgksfkdrkeiekrqeenrkdrekaaakfreyfpnfvgepkskdil
    klrlyeqqhgkclysgkeinlgrlnekgyveidhalpfsrtwddsfnnkvlvlgsenqnk
    gnqtpyeyfngkdnsrewqefkarvetsrfprskkqrillqkfdedgfkernlndtryvn
    rflcqfvadrmrltgkgkkrvfasngqitnllrgfwglrkvraendrhhaldavvvacst
    vamqqkitrfvrykemnafdgktidketgevlhqkthfpqpweffaqevmirvfgkpdgk
    pefeeadtleklrtllaeklssrpeavheyvtplfvsrapnrkmsgqghmetvksakrld
    egvsvlrvpltqlklkdlekmvnrerepklyealkarleahkddpakafaepfykydkag
    nrtqqvkavrveqvqktgvwvrnhngiadnatmvrvdvfekgdkyylvpiyswqvakgil
    pdravvqgkdeedwqliddsfnfkfslhpndlvevitkkarmfgyfaschrgtgniniri
    hdldhkigkngilegigvktalsfqkyqidelgkeirpcrlkkrppvrs
    

  • Chain 'B':
    No sequence available.