PDB entry 6jdg

View 6jdg on RCSB PDB site
Description: complexed crystal structure of passb with ssdna dt20 at 2.39 angstrom resolution
Deposited on 2019-02-01, released 2019-12-11
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2.39 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Single-stranded DNA-binding protein
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: ssb, PA4232
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Single-stranded DNA-binding protein
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: ssb, PA4232
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Single-stranded DNA-binding protein
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: ssb, PA4232
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Single-stranded DNA-binding protein
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: ssb, PA4232
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jdgA (A:)
margvnkvilvgnvggdpetrympngnavtnitlatseswkdkqtgqqqertewhrvvff
grlaeiageylrkgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllggrhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6jdgA (A:)
rgvnkvilvgnvggdpetrympngnavtnitlatseqertewhrvvffgrlaeiageylr
kgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jdgB (B:)
margvnkvilvgnvggdpetrympngnavtnitlatseswkdkqtgqqqertewhrvvff
grlaeiageylrkgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllggrhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6jdgB (B:)
rgvnkvilvgnvggdpetrympngnavtnitlatsesertewhrvvffgrlaeiageylr
kgsqvyvegslrtrkwqgqdrytteivvdingnmqllg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jdgC (C:)
margvnkvilvgnvggdpetrympngnavtnitlatseswkdkqtgqqqertewhrvvff
grlaeiageylrkgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllggrhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6jdgC (C:)
rgvnkvilvgnvggdpetrympngnavtnitlatsesertewhrvvffgrlaeiageylr
kgsqvyvegslrtrkwqgdrytteivvdingnmqllg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jdgD (D:)
margvnkvilvgnvggdpetrympngnavtnitlatseswkdkqtgqqqertewhrvvff
grlaeiageylrkgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllggrhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6jdgD (D:)
rgvnkvilvgnvggdpetrympngnavtnitlatseswkdkrtewhrvvffgrlaeiage
ylrkgsqvyvegslrtrkwqgqdgqdrytteivvdingnmqllg

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.