PDB entry 6jd1

View 6jd1 on RCSB PDB site
Description: cryo-em structure of sulfolobus solfataricus ketol-acid reductoisomerase (sso-kari) in complex with mg2+, nadh, and cpd at ph7.5
Deposited on 2019-01-30, released 2019-04-17
The last revision was dated 2019-05-01, with a file datestamp of 2019-04-26.
Experiment type: EM
Resolution: 3.38 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Putative ketol-acid reductoisomerase 2
    Species: Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [TaxId:273057]
    Gene: ilvC2, ilvC-2, SSO1322
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, NAI, 9TY, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jd1A (A:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1A (A:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvkn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jd1B (B:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1B (B:)
dktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfev
yeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppks
vdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavi
ssfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarli
aeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagyp
vfyrlwelatqsemakaekelykllgrkvkn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jd1C (C:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1C (C:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvknd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jd1D (D:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1D (D:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvkn

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jd1E (E:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1E (E:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jd1F (F:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1F (F:)
dktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfev
yeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppks
vdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavi
ssfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarli
aeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagyp
vfyrlwelatqsemakaekelykllgrkvk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6jd1G (G:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1G (G:)
dktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfev
yeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppks
vdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavi
ssfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarli
aeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagyp
vfyrlwelatqsemakaekelykllgrkvk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6jd1H (H:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1H (H:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvk

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6jd1I (I:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1I (I:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkv

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6jd1J (J:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1J (J:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkvk

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6jd1K (K:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1K (K:)
dktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfev
yeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppks
vdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavi
ssfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarli
aeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagyp
vfyrlwelatqsemakaekelykllgrk

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6jd1L (L:)
mdktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfe
vyeideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppk
svdtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiav
issfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarl
iaeegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagy
pvfyrlwelatqsemakaekelykllgrkvknd

    Sequence, based on observed residues (ATOM records):
    >6jd1L (L:)
ktvldanldplkgktigvigygnqgrvqatimrenglnvivgnvkdkyyelakkegfevy
eideavrrsdvalllipdevmkevyekkiapvlqgkkefvldfasgynvafglirppksv
dtimvaprmvgegimdlhkqgkgypvllgvkqdasgkawdyakaiakgigaipggiavis
sfeeealldlmsehtwvpilfgaikacydiavkeygvspeaallefyasgelaeiarlia
eegifnqmvhhsttsqygtltrmfkyydvvrriveneakyiwdgsfakewsleqqagypv
fyrlwelatqsemakaekelykllgrkv