PDB entry 6jcx

View 6jcx on RCSB PDB site
Description: mycobacterium tuberculosis transcription initiation complex with ecf sigma factor sigma h and 6nt rna
Deposited on 2019-01-30, released 2019-05-29
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: rpoB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: rpoC
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: rpoZ
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ECF RNA polymerase sigma factor SigH
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: sigH
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: DNA (5'-d(*tp*tp*gp*tp*gp*gp*gp*ap*gp*cp*tp*gp*tp*cp*ap*cp*gp*gp*ap*tp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (5'-d(*tp*gp*cp*ap*tp*cp*cp*gp*tp*gp*ap*gp*tp*cp*gp*ap*gp*gp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'I':
    Compound: RNA (5'-r(*cp*cp*up*cp*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ZN, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jcxA (A:)
    mghhhhhhhhhhssghiegrhmlisqrptlsedvltdnrsqfvieplepgfgytlgnslr
    rtllssipgaavtsiridgvlhefttvpgvkedvteiilnlkslvvsseedepvtmylrk
    qgpgevtagdivppagvtvhnpgmhiatlndkgklevelvvergrgyvpavqnrasgaei
    gripvdsiyspvlkvtykvdatrveqrtdfdklildvetknsisprdalasagktlvelf
    glarelnveaegieigpspaeadhiasfalpiddldltvrsynclkregvhtvgelvart
    esdlldirnfgqksidevkiklhqlglslkdsppsfdpsevagydvatgtwstegaydeq
    dyaeteql
    

    Sequence, based on observed residues (ATOM records):
    >6jcxA (A:)
    lisqrptlsedvltdnrsqfvieplepgfgytlgnslrrtllssipgaavtsiridgvlh
    efttvpgvkedvteiilnlkslvvsseedepvtmylrkqgpgevtagdivppagvtvhnp
    gmhiatlndkgklevelvvergrgyvpavqnrasgaeigripvdsiyspvlkvtykvdat
    rrtdfdklildvetknsisprdalasagktlvelfglar
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jcxB (B:)
    mghhhhhhhhhhssghiegrhmlisqrptlsedvltdnrsqfvieplepgfgytlgnslr
    rtllssipgaavtsiridgvlhefttvpgvkedvteiilnlkslvvsseedepvtmylrk
    qgpgevtagdivppagvtvhnpgmhiatlndkgklevelvvergrgyvpavqnrasgaei
    gripvdsiyspvlkvtykvdatrveqrtdfdklildvetknsisprdalasagktlvelf
    glarelnveaegieigpspaeadhiasfalpiddldltvrsynclkregvhtvgelvart
    esdlldirnfgqksidevkiklhqlglslkdsppsfdpsevagydvatgtwstegaydeq
    dyaeteql
    

    Sequence, based on observed residues (ATOM records):
    >6jcxB (B:)
    mlisqrptlsedvltdnrsqfvieplepgfgytlgnslrrtllssipgaavtsiridgvl
    hefttvpgvkedvteiilnlkslvvsseedepvtmylrkqgpgevtagdivppagvtvhn
    pgmhiatlndkgklevelvvergrgyvpavqgaeigripvdsiyspvlkvtykvdatrve
    qrtdfdklildvetknsisprdalasagktlvelfglarelnveaegieigp
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jcxC (C:)
    mvladsrqsktaaspspsrpqsssnnsvpgapnrvsfaklreplevpglldvqtdsfewl
    igsprwresaaergdvnpvggleevlyelspiedfsgsmslsfsdprfddvkapvdeckd
    kdmtyaaplfvtaefinnntgeiksqtvfmgdfpmmtekgtfiingtervvvsqlvrspg
    vyfdetidkstdktlhsvkvipsrgawlefdvdkrdtvgvridrkrrqpvtvllkalgwt
    seqiverfgfseimrstlekdntvgtdealldiyrklrpgepptkesaqtllenlffkek
    rydlarvgrykvnkklglhvgepitsstlteedvvatieylvrlhegqttmtvpggvevp
    vetddidhfgnrrlrtvgeliqnqirvgmsrmervvrermttqdveaitpqtlinirpvv
    aaikeffgtsqlsqfmdqnnplsglthkrrlsalgpgglsreraglevrdvhpshygrmc
    pietpegpnigligslsvyarvnpfgfietpyrkvvdgvvsdeivyltadeedrhvvaqa
    nspidadgrfveprvlvrrkageveyvpssevdymdvsprqmvsvatamipflehddanr
    almganmqrqavplvrseaplvgtgmelraaidagdvvvaeesgvieevsadyitvmhdn
    gtrrtyrmrkfarsnhgtcanqcpivdagdrveagqviadgpctddgemalgknllvaim
    pweghnyedaiilsnrlveedvltsihieeheidardtklgaeeitrdipnisdevladl
    dergivrigaevrdgdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphges
    gkvigirvfsrededelpagvnelvrvyvaqkrkisdgdklagrhgnkgvigkilpvedm
    pfladgtpvdiilnthgvprrmnigqilethlgwcahsgwkvdaakgvpdwaarlpdell
    eaqpnaivstpvfdgaqeaelqgllsctlpnrdgdvlvdadgkamlfdgrsgepfpypvt
    vgymyimklhhlvddkiharstgpysmitqqplggkaqfggqrfgemecwamqaygaayt
    lqelltiksddtvgrvkvyeaivkgenipepgipesfkvllkelqslclnvevlssdgaa
    ielregededleraaanlginlsrnesasvedla
    

    Sequence, based on observed residues (ATOM records):
    >6jcxC (C:)
    ssnnsvpgapnrvsfaklreplevpglldvqtdsfewligsprwresaaergvnpvggle
    evlyelspiedfsgsmslsfsdprfddvkapvdeckdkdmtyaaplfvtaefinnntgei
    ksqtvfmgdfpmmtekgtfiingtervvvsqlvrspgvyfdetidkstdktlhsvkvips
    rgawlefdvdkrdtvgvridrkrrqpvtvllkalgwtseqiverfgfseimrstlekdnt
    vgtdealldiyrklrpgepptkesaqtllenlffkekrydlarvgrykvnkklglhvgep
    itsstlteedvvatieylvrlhegqttmtvpggvevpvetddidhfgnrrlrtvgeliqn
    qirvgmsrmervvrermttqdveaitpqtlinirpvvaaikeffgtsqlsqfmdqnnpls
    glthkrrlsalgpgglsreraglevrdvhpshygrmcpietpegpnigligslsvyarvn
    pfgfietpyrkvvdgvvsdeivyltadeedrhvvaqanspidadgrfveprvlvrrkage
    veyvpssevdymdvsprqmvsvatamipflehddanralmganmqrqavplvrseaplvg
    tgmelraaidagdvvvaeesgvieevsadyitvmhdngtrrtyrmrkfarsnhgtcanqc
    pivdagdrveagqviadgpctddgemalgknllvaimpweghnyedaiilsnrlveedvl
    tsihieeheidardtklgaeeitrdipnisdevladldergivrigaevrdgdilvgkvt
    pkgeteltpeerllraifgekarevrdtslkvphgesgkvigirvfsrededelpagvne
    lvrvyvaqkrkisdgdklagrhgnkgvigkilpvedmpfladgtpvdiilnthgvprrmn
    igqilethlgwcahsgwkvdaakgvpdwaarlpdelleaqpnaivstpvfdgaqeaelqg
    llsctlpnrdgdvlvdadgkamlfdgrsgepfpypvtvgymyimklhhlvddkiharstg
    pysmitqqplggkaqfggqrfgemecwamqaygaaytlqelltiksddtvgrvkvyeaiv
    kgenipepgipesfkvllkelqslclnvevlssdgaaielregededleraaanlgin
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jcxD (D:)
    mvldvnffdelriglataedirqwsygevkkpetinyrtlkpekdglfcekifgptrdwe
    cycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylld
    lapkdlekiiyfaayvitsvdeemrhnelstleaemaverkavedqrdgelearaqklea
    dlaeleaegakadarrkvrdggeremrqirdraqreldrlediwstftklapkqlivden
    lyrelvdrygeyftgamgaesiqklienfdidaeaeslrdvirngkgqkklralkrlkvv
    aafqqsgnspmgmvldavpvippelrpmvqldggrfatsdlndlyrrvinrnnrlkrlid
    lgapeiivnnekrmlqesvdalfdngrrgrpvtgpgnrplkslsdllkgkqgrfrqnllg
    krvdysgrsvivvgpqlklhqcglpklmalelfkpfvmkrlvdlnhaqniksakrmverq
    rpqvwdvleeviaehpvllnraptlhrlgiqafepmlvegkaiqlhplvceafnadfdgd
    qmavhlplsaeaqaearilmlssnnilspasgrplamprldmvtglyylttevpgdtgey
    qpasgdhpetgvysspaeaimaadrgvlsvrakikvrltqlrppveieaelfghsgwqpg
    dawmaettlgrvmfnellplgypfvnkqmhkkvqaaiindlaerypmivvaqtvdklkda
    gfywatrsgvtvsmadvlvpprkkeildhyeeradkvekqfqrgalnhdernealveiwk
    eatdevgqalrehypddnpiitivdsgatgnftqtrtlagmkglvtnpkgefiprpvkss
    fregltvleyfinthgarkgladtalrtadsgyltrrlvdvsqdvivrehdcqtergivv
    elaerapdgtlirdpyietsayartlgtdavdeagnvivergqdlgdpeidallaagitq
    vkvrsvltcatstgvcatcygrsmatgklvdigeavgivaaqsigepgtqltmrtfhqgg
    vgeditgglprvqelfearvprgkapiadvtgrvrledgerfykitivpddggeevvydk
    iskrqrlrvfkhedgservlsdgdhvevgqqlmegsadphevlrvqgprevqihlvrevq
    evyraqgvsihdkhievivrqmlrrvtiidsgsteflpgslidraefeaenrrvvaegge
    paagrpvlmgitkaslatdswlsaasfqettrvltdaaincrsdklnglkenviigklip
    agtginryrniavqpteearaaaytipsyedqyyspdfgaatgaavplddygysdyr
    

    Sequence, based on observed residues (ATOM records):
    >6jcxD (D:)
    ldvnffdelriglataedirqwsygevkkpetinyrtlkpekdglfcekifgptrdwecy
    cgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldla
    pkdlekiiyfaayvitsvdeemrhnelstleaemaverkavedqrdgelearaqkleadl
    aeleaegakadarrkvrdggeremrqirdraqreldrlediwstftklapkqlivdenly
    relvdrygeyftgamgaesiqklienfdidaeaeslrdvirngkgqkklralkrlkvvaa
    fqqsgnspmgmvldavpvippelrpmvqldggrfatsdlndlyrrvinrnnrlkrlidlg
    apeiivnnekrmlqesvdalfdngrrgrpvtgpgnrplkslsdllkgkqgrfrqnllgkr
    vdysgrsvivvgpqlklhqcglpklmalelfkpfvmkrlvdlnhaqniksakrmverqrp
    qvwdvleeviaehpvllnraptlhrlgiqafepmlvegkaiqlhplvceafnadfdgdqm
    avhlplsaeaqaearilmlssnnilspasgrplamprldmvtglyylttevpgdtgeyqp
    asgdhpetgvysspaeaimaadrgvlsvrakikvrltqlrppveieaelfghsgwqpgda
    wmaettlgrvmfnellplgypfvnkqmhkkvqaaiindlaerypmivvaqtvdklkdagf
    ywatrsgvtvsmadvlvpprkkeildhyeeradkvekqfqrgalnhdernealveiwkea
    tdevgqalrehypddnpiitivdsgatgnftqtrtlagmkglvtnpkgefiprpvkssfr
    egltvleyfinthgarkgladtalrtadsgyltrrlvdvsqdvivrehdcqtergivvel
    adgtlirdpyietsayartlgtdavdeagnvivergqdlgdpeidallaagitqvkvrsv
    ltcatstgvcatcygrsmatgklvdigeavgivaaqsigepgtqltmgglprvqelfear
    vprgkapiadvtgrvrledgerfykitivpddggeevvydkiskrqrlrvfkhedgserv
    lsdgdhvevgqqlmegsadphevlrvqgprevqihlvrevqevyraqgvsihdkhieviv
    rqmlrrvtiidsgsteflpgslidraefeaenrrvvaaagrpvlmgitkaslatdswlsa
    asfqettrvltdaaincrsdklnglkenviigklipagtginryrniavqpteearaa
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jcxE (E:)
    msisqsdaslaavpavdqfdpssgasggydtplgitnppidelldrvsskyalviyaakr
    arqindyynqlgegileyvgplvepglqekplsialreihadllehtege
    

    Sequence, based on observed residues (ATOM records):
    >6jcxE (E:)
    dtplgitnppidelldrvsskyalviyaakrarqindyynyvgplvepglqekplsialr
    eihadllehte
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jcxF (F:)
    gamadidgvtgsaglqpgpseetdeeltarferdaiplldqlyggalrmtrnpadaedll
    qetmvkayagfrsfrhgtnlkawlyriltntyinsyrkkqrqpaeypteqitdwqlasna
    ehsstglrsaevealealpdteikealqalpeefrmavyyadvegfpykeiaeimdtpig
    tvmsrlhrgrrqlrglladvardrgfargeqahegvss
    

    Sequence, based on observed residues (ATOM records):
    >6jcxF (F:)
    tdeeltarferdaiplldqlyggalrmtrnpadaedllqetmvkayagfrsfrhgtnlka
    wlyriltntyinsyrkkqrqpaeypteqitdwqlasnaehsstglrsaevealealpdte
    ikealqalpeefrmavyyadvegfpykeiaeimdtpigtvmsrlhrgrrqlrglladvar
    drgfar
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.