PDB entry 6jby

View 6jby on RCSB PDB site
Description: crystal structure of endo-deglycosylated hydroxynitrile lyase isozyme 5 of prunus communis
Deposited on 2019-01-27, released 2020-04-01
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hnl isoenzyme 5
    Species: Prunus dulcis [TaxId:3755]
    Gene: hnl5
    Database cross-references and differences (RAF-indexed):
    • PDB 6JBY
  • Heterogens: NAG, FAD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jbyA (A:)
    eaeahhhhhhlantsahdfsylkfvynatdtslegsydyivigggtsgcplaatlsekyk
    vlllergtiateypntltadgfaynlqqqddgktpverfvsedgidnvrarilggttiin
    agvyaranisfysqtgiewdldlvnktyewvedaivvkpnnqswqsvigegfleagilpd
    ngfsldheagtrltgstfdnngtrhaadellnkgdpnnllvavqasvekilfssntsnls
    aigviytdsdgnshqafvrgngevivsagtigtpqllllsgvgpesylsslnitvvqpnp
    yvgqfvydnprnfinilppnpieasvvtvlgirsdyyqvslsslpfstppfslfpttsyp
    lpnstfahivsqvpgplshgsvtlnsssdvriapnikfnyysnstdlancvsgmkklgdl
    lrtkalepykardvlgidgfnylgvplpenqtddasfetfcldnvasywhyhggslvgkv
    lddsfrvmgikalrvvdastfpyepnshpqgfylmlgryvglqilqersirleaihniqe
    sm
    

    Sequence, based on observed residues (ATOM records):
    >6jbyA (A:)
    hhlantsahdfsylkfvynatdtslegsydyivigggtsgcplaatlsekykvlllergt
    iateypntltadgfaynlqqqddgktpverfvsedgidnvrarilggttiinagvyaran
    isfysqtgiewdldlvnktyewvedaivvkpnnqswqsvigegfleagilpdngfsldhe
    agtrltgstfdnngtrhaadellnkgdpnnllvavqasvekilfssntsnlsaigviytd
    sdgnshqafvrgngevivsagtigtpqllllsgvgpesylsslnitvvqpnpyvgqfvyd
    nprnfinilppnpieasvvtvlgirsdyyqvslsslpfstppfslfpttsyplpnstfah
    ivsqvpgplshgsvtlnsssdvriapnikfnyysnstdlancvsgmkklgdllrtkalep
    ykardvlgidgfnylgvplpenqtddasfetfcldnvasywhyhggslvgkvlddsfrvm
    gikalrvvdastfpyepnshpqgfylmlgryvglqilqers