PDB entry 6jbs

View 6jbs on RCSB PDB site
Description: bifunctional xylosidase/glucosidase lxyl
Deposited on 2019-01-26, released 2020-02-12
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-D-xylosidase/beta-D-glucosidase
    Species: Lentinula edodes [TaxId:5353]
    Gene: Lxyl-p1-2
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8GLP2 (Start-802)
      • expression tag (803)
  • Chain 'B':
    Compound: Beta-D-xylosidase/beta-D-glucosidase
    Species: Lentinula edodes [TaxId:5353]
    Gene: Lxyl-p1-2
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8GLP2 (Start-802)
      • expression tag (803)
  • Chain 'C':
    Compound: Beta-D-xylosidase/beta-D-glucosidase
    Species: Lentinula edodes [TaxId:5353]
    Gene: Lxyl-p1-2
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8GLP2 (Start-802)
      • expression tag (803)
  • Chain 'D':
    Compound: Beta-D-xylosidase/beta-D-glucosidase
    Species: Lentinula edodes [TaxId:5353]
    Gene: Lxyl-p1-2
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8GLP2 (Start-802)
      • expression tag (803)
  • Heterogens: NAG, TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jbsA (A:)
mfparlslavlfsvspalayfsglglgsersifrrdlnstgdesnstqwpaplanggksw
asafkkakatvtemtveelanitsgviglcsgvtgavtrlgipefclqdgpigprgvhgs
sqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtggplgrtplngrgwegtf
adpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyididgvsqadiqlpissnv
ddltmhelymwsfaeavragtnhimcsynrinnthscsnakglnqllktelnfqggvvsd
wggqwdsvpaaengldvampgkgflgalgdfwgatlvelinngtvsedlvrdkavriltg
yyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelikeigsasvtllkntgslp
lkhpqriavlgndatynvlgpnacglansacdidnlngtlttgggsgsalspytitplea
lqkraiednaeiaavvansntttgaedaiaallpdadvtfvflnryseegadapdfslgg
dgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailvaylpgqeagnslvpvlyg
dvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfidyrwfdkmgitpryefgf
glsyttftysnlivdhgrwakdyssvmetaepfaewdgtnslydviftvfatitntgnlt
gsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpirrkdvsswsvvdqlwyvp
ngdflisvggssrdlplnttwtphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jbsA (A:)
esnstqwpaplanggkswasafkkakatvtemtveelanitsgviglcsgvtgavtrlgi
pefclqdgpigprgvhgssqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvt
ggplgrtplngrgwegtfadpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyi
didgvsqadiqlpissnvddltmhelymwsfaeavragtnhimcsynrinnthscsnakg
lnqllktelnfqggvvsdwggqwdsvpaaengldvampgkgflgalgdfwgatlvelinn
gtvsedlvrdkavriltgyyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaeli
keigsasvtllkntgslplkhpqriavlgndatynvlgpnacglansacdidnlngtltt
gggsgsalspytitplealqkraiednaeiaavvansntttgaedaiaallpdadvtfvf
lnryseegadapdfslggdgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailv
aylpgqeagnslvpvlygdvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfi
dyrwfdkmgitpryefgfglsyttftysnlivdhgrwakdyssvmetaepfaewdgtnsl
ydviftvfatitntgnltgsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpi
rrkdvsswsvvdqlwyvpngdflisvggssrdlplnttwtph

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jbsB (B:)
mfparlslavlfsvspalayfsglglgsersifrrdlnstgdesnstqwpaplanggksw
asafkkakatvtemtveelanitsgviglcsgvtgavtrlgipefclqdgpigprgvhgs
sqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtggplgrtplngrgwegtf
adpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyididgvsqadiqlpissnv
ddltmhelymwsfaeavragtnhimcsynrinnthscsnakglnqllktelnfqggvvsd
wggqwdsvpaaengldvampgkgflgalgdfwgatlvelinngtvsedlvrdkavriltg
yyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelikeigsasvtllkntgslp
lkhpqriavlgndatynvlgpnacglansacdidnlngtlttgggsgsalspytitplea
lqkraiednaeiaavvansntttgaedaiaallpdadvtfvflnryseegadapdfslgg
dgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailvaylpgqeagnslvpvlyg
dvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfidyrwfdkmgitpryefgf
glsyttftysnlivdhgrwakdyssvmetaepfaewdgtnslydviftvfatitntgnlt
gsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpirrkdvsswsvvdqlwyvp
ngdflisvggssrdlplnttwtphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jbsB (B:)
snstqwpaplanggkswasafkkakatvtemtveelanitsgviglcsgvtgavtrlgip
efclqdgpigprgvhgssqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtg
gplgrtplngrgwegtfadpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyid
idgvsqadiqlpissnvddltmhelymwsfaeavragtnhimcsynrinnthscsnakgl
nqllktelnfqggvvsdwggqwdsvpaaengldvampgkgflgalgdfwgatlvelinng
tvsedlvrdkavriltgyyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelik
eigsasvtllkntgslplkhpqriavlgndatynvlgpnacglansacdidnlngtlttg
ggsgsalspytitplealqkraiednaeiaavvansntttgaedaiaallpdadvtfvfl
nryseegadapdfslggdgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailva
ylpgqeagnslvpvlygdvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfid
yrwfdkmgitpryefgfglsyttftysnlivdhgrwakdyssvmetaepfaewdgtnsly
dviftvfatitntgnltgsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpir
rkdvsswsvvdqlwyvpngdflisvggssrdlplnttwtph

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jbsC (C:)
mfparlslavlfsvspalayfsglglgsersifrrdlnstgdesnstqwpaplanggksw
asafkkakatvtemtveelanitsgviglcsgvtgavtrlgipefclqdgpigprgvhgs
sqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtggplgrtplngrgwegtf
adpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyididgvsqadiqlpissnv
ddltmhelymwsfaeavragtnhimcsynrinnthscsnakglnqllktelnfqggvvsd
wggqwdsvpaaengldvampgkgflgalgdfwgatlvelinngtvsedlvrdkavriltg
yyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelikeigsasvtllkntgslp
lkhpqriavlgndatynvlgpnacglansacdidnlngtlttgggsgsalspytitplea
lqkraiednaeiaavvansntttgaedaiaallpdadvtfvflnryseegadapdfslgg
dgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailvaylpgqeagnslvpvlyg
dvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfidyrwfdkmgitpryefgf
glsyttftysnlivdhgrwakdyssvmetaepfaewdgtnslydviftvfatitntgnlt
gsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpirrkdvsswsvvdqlwyvp
ngdflisvggssrdlplnttwtphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jbsC (C:)
snstqwpaplanggkswasafkkakatvtemtveelanitsgviglcsgvtgavtrlgip
efclqdgpigprgvhgssqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtg
gplgrtplngrgwegtfadpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyid
idgvsqadiqlpissnvddltmhelymwsfaeavragtnhimcsynrinnthscsnakgl
nqllktelnfqggvvsdwggqwdsvpaaengldvampgkgflgalgdfwgatlvelinng
tvsedlvrdkavriltgyyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelik
eigsasvtllkntgslplkhpqriavlgndatynvlgpnacglansacdidnlngtlttg
ggsgsalspytitplealqkraiednaeiaavvansntttgaedaiaallpdadvtfvfl
nryseegadapdfslggdgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailva
ylpgqeagnslvpvlygdvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfid
yrwfdkmgitpryefgfglsyttftysnlivdhgrwakdyssvmetaepfaewdgtnsly
dviftvfatitntgnltgsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpir
rkdvsswsvvdqlwyvpngdflisvggssrdlplnttwtph

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jbsD (D:)
mfparlslavlfsvspalayfsglglgsersifrrdlnstgdesnstqwpaplanggksw
asafkkakatvtemtveelanitsgviglcsgvtgavtrlgipefclqdgpigprgvhgs
sqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtggplgrtplngrgwegtf
adpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyididgvsqadiqlpissnv
ddltmhelymwsfaeavragtnhimcsynrinnthscsnakglnqllktelnfqggvvsd
wggqwdsvpaaengldvampgkgflgalgdfwgatlvelinngtvsedlvrdkavriltg
yyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelikeigsasvtllkntgslp
lkhpqriavlgndatynvlgpnacglansacdidnlngtlttgggsgsalspytitplea
lqkraiednaeiaavvansntttgaedaiaallpdadvtfvflnryseegadapdfslgg
dgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailvaylpgqeagnslvpvlyg
dvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfidyrwfdkmgitpryefgf
glsyttftysnlivdhgrwakdyssvmetaepfaewdgtnslydviftvfatitntgnlt
gsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpirrkdvsswsvvdqlwyvp
ngdflisvggssrdlplnttwtphhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jbsD (D:)
snstqwpaplanggkswasafkkakatvtemtveelanitsgviglcsgvtgavtrlgip
efclqdgpigprgvhgssqfpagltvaatwdrtlmyarargmgqefhdqgvhlalapvtg
gplgrtplngrgwegtfadpyacgeasylsvkgltdagvatvskhwiayeqetsrnlyid
idgvsqadiqlpissnvddltmhelymwsfaeavragtnhimcsynrinnthscsnakgl
nqllktelnfqggvvsdwggqwdsvpaaengldvampgkgflgalgdfwgatlvelinng
tvsedlvrdkavriltgyyylgqdtnppppfvyntigaptlnatsgyrnvrkpgtaelik
eigsasvtllkntgslplkhpqriavlgndatynvlgpnacglansacdidnlngtlttg
ggsgsalspytitplealqkraiednaeiaavvansntttgaedaiaallpdadvtfvfl
nryseegadapdfslggdgdnlmdlavtyssnvvvvihttgvvdiekwadnpnvtailva
ylpgqeagnslvpvlygdvapsgklpwtwgksiddyvpngvvytdayspqsnftegvfid
yrwfdkmgitpryefgfglsyttftysnlivdhgrwakdyssvmetaepfaewdgtnsly
dviftvfatitntgnltgsevaqlyisipgdnqpvrqlrgfdkikdlpvgdsavvtfpir
rkdvsswsvvdqlwyvpngdflisvggssrdlplnttwtph