PDB entry 6jbk

View 6jbk on RCSB PDB site
Description: Crystal structure of an actin monomer in complex with the nucleator Cordon-Bleu WH2-motif peptide mutant. T22V
Class: structural protein/protein binding
Keywords: WH2, actin, sequestering, PROTEIN BINDING, STRUCTURAL PROTEIN-PROTEIN BINDING complex
Deposited on 2019-01-25, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-05, with a file datestamp of 2020-01-31.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: ACTA1, ACTA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jbka1, d6jbka2
  • Chain 'B':
    Compound: Peptide from Protein cordon-bleu
    Species: Mus musculus [TaxId:10090]
    Gene: Cobl, Kiaa0633
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5NBX1 (0-21)
      • engineered mutation (21)
  • Chain 'C':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: ACTA1, ACTA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jbkc1, d6jbkc2
  • Chain 'D':
    Compound: Peptide from Protein cordon-bleu
    Species: Mus musculus [TaxId:10090]
    Gene: Cobl, Kiaa0633
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5NBX1 (0-21)
      • engineered mutation (21)
  • Chain 'E':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: ACTA1, ACTA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jbke1, d6jbke2
  • Chain 'F':
    Compound: Peptide from Protein cordon-bleu
    Species: Mus musculus [TaxId:10090]
    Gene: Cobl, Kiaa0633
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5NBX1 (0-21)
      • engineered mutation (21)
  • Chain 'G':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Gene: ACTA1, ACTA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jbkg1, d6jbkg2
  • Chain 'H':
    Compound: Peptide from Protein cordon-bleu
    Species: Mus musculus [TaxId:10090]
    Gene: Cobl, Kiaa0633
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5NBX1 (0-21)
      • engineered mutation (21)
  • Heterogens: ATP, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jbkA (A:)
mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
kqeydeagpsivhrkcf

    Sequence, based on observed residues (ATOM records): (download) 
    >6jbkA (A:)
ttalvcdngsglvkagfagddapravfpsivgsyvgdeaqskrgiltlkypiehgiitnw
ddmekiwhhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqav
lslyasgrttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergys
fvttaereivrdikeklcyvaldfenemataassssleksyelpdgqvitignerfrcpe
tlfqpsfigmesagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeita
lapstmkikiiapperkysvwiggsilaslstfqqmwitkqeydeagpsivhr

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6jbkC (C:)
mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
kqeydeagpsivhrkcf

    Sequence, based on observed residues (ATOM records): (download) 
    >6jbkC (C:)
ttalvcdngsglvkagfagddapravfpsivgsyvgdeaqskrgiltlkypiehgiitnw
ddmekiwhhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqav
lslyasgrttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergys
fvttaereivrdikeklcyvaldfenemataassssleksyelpdgqvitignerfrcpe
tlfqpsfigmesagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeita
lapstmkikiiapperkysvwiggsilaslstfqqmwitkqeydeagpsivhr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6jbkE (E:)
mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
kqeydeagpsivhrkcf

    Sequence, based on observed residues (ATOM records): (download) 
    >6jbkE (E:)
ttalvcdngsglvkagfagddapravfpsivgsyvgdeaqskrgiltlkypiehgiitnw
ddmekiwhhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqav
lslyasgrttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergys
fvttaereivrdikeklcyvaldfenemataassssleksyelpdgqvitignerfrcpe
tlfqpsfigmesagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeita
lapstmkikiiapperkysvwiggsilaslstfqqmwitkqeydeagpsivhr

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6jbkG (G:)
mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
kqeydeagpsivhrkcf

    Sequence, based on observed residues (ATOM records): (download) 
    >6jbkG (G:)
ttalvcdngsglvkagfagddapravfpsivgsyvgdeaqskrgiltlkypiehgiitnw
ddmekiwhhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqav
lslyasgrttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergys
fvttaereivrdikeklcyvaldfenemataassssleksyelpdgqvitignerfrcpe
tlfqpsfigmesagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeita
lapstmkikiiapperkysvwiggsilaslstfqqmwitkqeydeagpsivhr

  • Chain 'H':
    No sequence available.