PDB entry 6jb8

View 6jb8 on RCSB PDB site
Description: Crystal structure of nanobody D3-L11 in complex with hen egg-white lysozyme
Class: immune system/hydrolase
Keywords: nanobody, hot-spot mutagenesis, thermodynamics, biomolecular recognition, IMMUNE SYSTEM, IMMUNE SYSTEM-HYDROLASE complex
Deposited on 2019-01-25, released 2019-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nanobody D3-L11
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JB8
    Domains in SCOPe 2.08: d6jb8a_
  • Chain 'B':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jb8b_
  • Heterogens: NO3, NA, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6jb8A (A:)
    dvqlvesgggsvqaggslrlscaasgstdsieymtwfrqapgkaregvaalythtgntyy
    tdsvkgrftisqdkaknmaylrmdsvksedtaiytcgatrkyvpvrfaldqssydywgqg
    tqvtvsssaghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jb8A (A:)
    vqlvesgggsvqaggslrlscaasgstdsieymtwfrqapgkaregvaalythtgntyyt
    dsvkgrftisqdkaknmaylrmdsvksedtaiytcgatrkyvpvrfaldqssydywgqgt
    qvtvs
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6jb8B (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl