PDB entry 6jb5

View 6jb5 on RCSB PDB site
Description: Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II)
Class: immune system/hydrolase
Keywords: nanobody, hot-spot mutagenesis, thermodynamics, biomolecular recognition, IMMUNE SYSTEM, IMMUNE SYSTEM-HYDROLASE complex
Deposited on 2019-01-25, released 2019-11-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nanobody D3-L11
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JB5 (0-End)
    Domains in SCOPe 2.07: d6jb5a_
  • Chain 'B':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6jb5b_
  • Heterogens: CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6jb5A (A:)
    dvqlvesgggsvqaggslrlscaasgstdsieymtwfrqapgkaregvaalythtgntyy
    tdsvkgrftisqdkaknmaylrmdsvksedtaiytcgatrkavpvrfaldqssydywgqg
    tqvtvsssaghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6jb5A (A:)
    dvqlvesgggsvqaggslrlscaasgstdsieymtwfrqapgkaregvaalythtgntyy
    tdsvkgrftisqdkaknmaylrmdsvksedtaiytcgatrkavpvrfaldqssydywgqg
    tqvtvs
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6jb5B (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl