PDB entry 6j9t

View 6j9t on RCSB PDB site
Description: Complex structure of Lactobacillus casei lactate dehydrogenase with fructose-1,6-bisphosphate
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on 2019-01-24, released 2019-02-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9ta1, d6j9ta2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9tb1, d6j9tb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9tc1, d6j9tc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9td1, d6j9td2
  • Chain 'E':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9te1, d6j9te2
  • Chain 'F':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei subsp. casei ATCC 393 [TaxId:219334]
    Gene: ldh, LBCZ_2323
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j9tf1, d6j9tf2
  • Heterogens: SO4, FBP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6j9tA (A:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tA (A:)
sitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpfts
pkkiysaeysdakdadlvvitagapqtrldlvnknlkilksivdpivdsgfngiflvaan
pvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtef
pvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalari
skailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksa
sqlkkvltda

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6j9tB (B:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tB (B:)
sitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpfts
pkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngifl
vaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehg
dtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiata
lariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesm
qksasqlkkvltdafa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6j9tC (C:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tC (C:)
sitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpfts
pkkiysaeysdakdadlvvitagapqtrldlvnknlkilksivdpivdsgfngiflvaan
pvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtef
pvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalari
skailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksa
sqlkkvltdaf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6j9tD (D:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tD (D:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflv
aanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgd
tefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatal
ariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmq
ksasqlkkvltdaf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6j9tE (E:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tE (E:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflv
aanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgd
tefpvwshaniggvtiaewvkedklvkmfedvrdaayeiiklkgatfygiatalariska
ilndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasql
kkvltdaf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6j9tF (F:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9tF (F:)
sitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpfts
pkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngifl
vaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehg
dtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiata
lariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesm
qksasqlkkvltdafa