PDB entry 6j9q

View 6j9q on RCSB PDB site
Description: Crystal structure of Trypanosoma brucei gambiense glycerol kinase complex with AMP-PNP.
Class: transferase
Keywords: trypanosoma, glycerol kinase, sugar kinase superfamily, transferase, glycosome
Deposited on 2019-01-24, released 2020-01-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Gene: gk
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3KVM3 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6j9qa1, d6j9qa2, d6j9qa3
  • Chain 'B':
    Compound: glycerol kinase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Gene: gk
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3KVM3 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6j9qb1, d6j9qb2, d6j9qb3
  • Chain 'C':
    Compound: glycerol kinase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Gene: gk
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3KVM3 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6j9qc1, d6j9qc2, d6j9qc3
  • Chain 'D':
    Compound: glycerol kinase
    Species: Trypanosoma brucei gambiense [TaxId:31285]
    Gene: gk
    Database cross-references and differences (RAF-indexed):
    • Uniprot D3KVM3 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6j9qd1, d6j9qd2, d6j9qd3
  • Heterogens: GOL, ANP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6j9qA (A:)
gidpftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsa
ckcmsvaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditk
kvtaelgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlm
yklsggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetd
ecgvaaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhg
llstvgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgiv
fvpafsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnl
sslrvdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkav
srrenswktvspsgsamereamiaewrealkrtkwakl

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9qA (A:)
ftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsackcm
svaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditkkvta
elgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlmykls
ggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetdecgv
aaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhgllst
vgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgivfvpa
fsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnlsslr
vdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkavsrre
nswktvspsgsamereamiaewrealkrtkwak

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6j9qB (B:)
gidpftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsa
ckcmsvaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditk
kvtaelgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlm
yklsggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetd
ecgvaaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhg
llstvgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgiv
fvpafsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnl
sslrvdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkav
srrenswktvspsgsamereamiaewrealkrtkwakl

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9qB (B:)
ftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsackcm
svaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditkkvta
elgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlmykls
ggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetdecgv
aaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhgllst
vgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgivfvpa
fsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnlsslr
vdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkavsrre
nswktvspsgsamereamiaewrealkrtkwak

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6j9qC (C:)
gidpftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsa
ckcmsvaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditk
kvtaelgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlm
yklsggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetd
ecgvaaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhg
llstvgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgiv
fvpafsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnl
sslrvdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkav
srrenswktvspsgsamereamiaewrealkrtkwakl

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9qC (C:)
ftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsackcm
svaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditkkvta
elgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlmykls
ggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetdecgv
aaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhgllst
vgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgivfvpa
fsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnlsslr
vdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkavsrre
nswktvspsgsamereamiaewrealkrtkwak

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6j9qD (D:)
gidpftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsa
ckcmsvaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditk
kvtaelgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlm
yklsggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetd
ecgvaaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhg
llstvgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgiv
fvpafsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnl
sslrvdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkav
srrenswktvspsgsamereamiaewrealkrtkwakl

    Sequence, based on observed residues (ATOM records): (download) 
    >6j9qD (D:)
ftmkyvgsidqgttstrfiifderqrpvsvhqvphtqhtphpgwlehdpmeifrsackcm
svaiaklrqkdasfrkieaigitnqrettvawdrvtkeplcyapvwndlrtyditkkvta
elgggdsmfaskitglpvstyfaafkmrwmlenvpavadacrrgtlcfgtidtwlmykls
ggkafvtdvtnasrtflmdlrtrkwspelceklkipmetlpeirsnselfgyvetdecgv
aaalnertpimgsigdqqsalfgnmcfekgeakntygtgcfllmnvgeearfskhgllst
vgfqvgrdgpcyyalegaiacagatvewmrrnmnlfshiteceklarsvpgtqgivfvpa
fsgllapywdpsargtivgmtlkttrahviraalqaialqlndvvgsmkrdaglnlsslr
vdgglskngllmeiqasllgvdilvpsmhettalgaalcaglaagvwtsleevkavsrre
nswktvspsgsamereamiaewrealkrtkwak