PDB entry 6j9c

View 6j9c on RCSB PDB site
Description: crystal structure of arabidopsis thaliana transcription factor lec2- dna complex
Deposited on 2019-01-22, released 2019-05-29
The last revision was dated 2019-05-29, with a file datestamp of 2019-05-24.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: B3 domain-containing transcription factor LEC2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: LEC2, At1g28300, F3H9.5
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(*gp*ap*tp*tp*cp*tp*gp*cp*ap*tp*gp*gp*ap*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*cp*ap*ap*tp*cp*cp*ap*tp*gp*cp*ap*gp*ap*ap*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: B3 domain-containing transcription factor LEC2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: LEC2, At1g28300, F3H9.5
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(*gp*ap*tp*tp*cp*tp*gp*cp*ap*tp*gp*gp*ap*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*cp*ap*ap*tp*cp*cp*ap*tp*gp*cp*ap*gp*ap*ap*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j9cA (A:)
mstfdnkklrvlcekelknsdvgslgrivlpkrdaeanlpklsdkegivvqmrdvfsmqs
wsfkykfwsnnksrmyvlentgefvkqngaeigdfltiyedesknlyfamngnsglehhh
hhh

    Sequence, based on observed residues (ATOM records):
    >6j9cA (A:)
dnkklrvlcekelknsdvgslgrivlpkrdaeanlpklsdkegivvqmrdvfsmqswsfk
ykfwsnnksrmyvlentgefvkqngaeigdfltiyedesknlyfamngnsg

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j9cD (D:)
mstfdnkklrvlcekelknsdvgslgrivlpkrdaeanlpklsdkegivvqmrdvfsmqs
wsfkykfwsnnksrmyvlentgefvkqngaeigdfltiyedesknlyfamngnsglehhh
hhh

    Sequence, based on observed residues (ATOM records):
    >6j9cD (D:)
stfdnkklrvlcekelknsdvgslgrivlpkrdaeanlpklsdkegivvqmrdvfsmqsw
sfkykfwsnnksrmyvlentgefvkqngaeigdfltiyedesknlyfamngn

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.