PDB entry 6j8o

View 6j8o on RCSB PDB site
Description: structure of a hypothetical protease
Deposited on 2019-01-20, released 2020-01-22
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Small vasohibin-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SVBP, CCDC23
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tubulinyl-Tyr carboxypeptidase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: VASH1, KIAA1036, VASH
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7L8A9 (1-End)
      • initiating methionine (0)
      • conflict (100)
  • Chain 'C':
    Compound: 8-mer peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J8O (Start-7)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j8oA (A:)
gspparkektkvkesvsrvekakqksaqqelkqrqraeiyalnrvmtel

    Sequence, based on observed residues (ATOM records):
    >6j8oA (A:)
vekakqksaqqelkqrqraeiyalnrvmtel

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j8oB (B:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpiksleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrlkig

    Sequence, based on observed residues (ATOM records):
    >6j8oB (B:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpiksleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j8oC (C:)
geeegeey

    Sequence, based on observed residues (ATOM records):
    >6j8oC (C:)
eegeey