PDB entry 6j8n

View 6j8n on RCSB PDB site
Description: crystal structure of svbp-vash1 complex, mutation c169a of vash1
Deposited on 2019-01-20, released 2019-06-19
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Small vasohibin-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SVBP, CCDC23
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tubulinyl-Tyr carboxypeptidase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: VASH1, KIAA1036, VASH
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7L8A9 (1-End)
      • initiating methionine (0)
      • engineered mutation (100)
  • Chain 'C':
    Compound: Small vasohibin-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SVBP, CCDC23
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Tubulinyl-Tyr carboxypeptidase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: VASH1, KIAA1036, VASH
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7L8A9 (1-End)
      • initiating methionine (0)
      • engineered mutation (100)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j8nA (A:)
mdpparkektkvkesvsrvekakqksaqqelkqrqraeiyalnrvmteleqqqfdefckq
mqppge

    Sequence, based on observed residues (ATOM records):
    >6j8nA (A:)
saqqelkqrqraeiyalnrvmtel

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j8nB (B:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpikaleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrlkig

    Sequence, based on observed residues (ATOM records):
    >6j8nB (B:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpikaleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j8nC (C:)
mdpparkektkvkesvsrvekakqksaqqelkqrqraeiyalnrvmteleqqqfdefckq
mqppge

    Sequence, based on observed residues (ATOM records):
    >6j8nC (C:)
saqqelkqrqraeiyalnrvmtel

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j8nD (D:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpikaleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrlkig

    Sequence, based on observed residues (ATOM records):
    >6j8nD (D:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpikaleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrl