PDB entry 6j8f

View 6j8f on RCSB PDB site
Description: crystal structure of svbp-vash1 with peptide mimic the c-terminal of alpha-tubulin
Deposited on 2019-01-18, released 2019-06-19
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 2.28 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Small vasohibin-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SVBP, CCDC23
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tubulinyl-Tyr carboxypeptidase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: VASH1, KIAA1036, VASH
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 8-mer peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J8F (Start-7)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j8fA (A:)
pparkektkvkesvsrvekakqksaqqelkqrqraeiyalnrvmte

    Sequence, based on observed residues (ATOM records):
    >6j8fA (A:)
saqqelkqrqraeiyalnrvmt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j8fB (B:)
mdeatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqry
irelqynhtgtqffeikksrpltglmdlakemtkealpikcleavilgiyltnsmptler
fpisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaayg
rcwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrlkig

    Sequence, based on observed residues (ATOM records):
    >6j8fB (B:)
deatwermwkhvakihpdgekvaqrirgatdlpkipipsvptfqpstpvperleavqryi
relqynhtgtqffeikksrpltglmdlakemtkealpikcleavilgiyltnsmptlerf
pisfktyfsgnyfrhivlgvnfagrygalgmsrredlmykppafrtlselvldfeaaygr
cwhvlkkvklgqsvshdphsveqiewkhsvldverlgrddfrkelerhardmrl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j8fC (C:)
geeegecy

    Sequence, based on observed residues (ATOM records):
    >6j8fC (C:)
egecy