PDB entry 6j7v

View 6j7v on RCSB PDB site
Description: structure of hrpv6 vp5 fitted in the cryoem density of the spike
Deposited on 2019-01-18, released 2019-03-06
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: EM
Resolution: 16 Å
R-factor: N/A
AEROSPACI score: -0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp5
    Species: Halorubrum pleomorphic virus 6 [TaxId:1156721]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j7vA (A:)
    iaplvgyaigaaaisavggigvgwtlrefevvgsddpaegltpdvlrnqlsdsvvkrksn
    nqstmvdnqnildgvehtayteakiaaieelnagssesavlsaansaidsyettvrtnfy
    kswnetvreleamtqtviahadvglsyitdfgdprfgnlasgtspntlkdttvsmpdgtn
    ftlltfrhntgwdsgnaaysvveynpkevvtstnsntyntvdgtqymkfsewnavetemd
    tvfqnvrngistwvtnvygdvqsgaieisdlvtpreratmmaqeegmsqaiadlialnvp
    vdaereatitiqdtgatlpgtfaltdssdgplsagqtydpstfsgdvyftadmslvegpw
    dainsgvdggtititsepyegtaievttvesetvsvpaadwtdngdgtwsydasgdlett
    itnvdsarfvstatettydtlqlkgaftvdklvnkqsgeevsstsftssepqtdsnyitq
    dewdqleqqnkeliekyeqsqsgggldlggldmfgvpgemvavgaaavigflmlgnn
    

    Sequence, based on observed residues (ATOM records):
    >6j7vA (A:)
    igaaaisavggigvgwtlrefevvgsddpaegltpdvlrnqlsdsvvkrksnnqstmvdn
    qnildgvehtayteakiaaieelnagssesavlsaansaidsyettvrtnfykswnetvr
    eleamtqtviahadvglsyitdfgdprfgnlasgtspntlkdttvsmpdgtnftlltfrh
    ntgwdsgnaaysvveynpkevvtstnsntyntvdgtqymkfsewnavetemdtvfqnvrn
    gistwvtnvygdvqsgaieisdlvtpreratmmaqeegmsqaiadlialnvpvdaereat
    itiqdtgatlpgtfaltdssdgplsagqtydpstfsgdvyftadmslvegpwdainsgvd
    ggtititsepyegtaievttvesetvsvpaadwtdngdgtwsydasgdlettitnvdsar
    fvstatettydtlqlkgaftvdklvnkqsgeevsstsftssepqtdsnyitqdewdqleq
    qnkeliekye