PDB entry 6j7f

View 6j7f on RCSB PDB site
Description: Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP
Class: lipid binding protein
Keywords: lipid transferase, LIPID BINDING PROTEIN
Deposited on 2019-01-18, released 2020-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 2.88 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein prenyltransferase alpha subunit repeat-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: PTAR1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Geranylgeranyl transferase type-2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Gene: Rabggtb, Ggtb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j7fb_
  • Chain 'C':
    Compound: Synaptobrevin homolog YKT6
    Species: Homo sapiens [TaxId:9606]
    Gene: YKT6
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GER, FAR, TLA, DPO

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6j7fB (B:)
gplgsmgtpqkdviiksdapdtlllekhadyiasygskkddyeycmseylrmsgiywglt
vmdlmgqlhrmnreeilafikscqhecggisasighdphllytlsavqiltlydsinvid
vnkvveyvkglqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscm
nfdggfgcrpgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpek
lpdvcyswwvlaslkiigrlhwidreklrnfilacqdeetggfadrpgdmvdpfhtlfgi
aglsllgeeqikpvnpvfcmpeevlqrvnvqpelvs

    Sequence, based on observed residues (ATOM records): (download) 
    >6j7fB (B:)
tpqkdviiksdapdtlllekhadyiasygskkddyeycmseylrmsgiywgltvmdlmgq
lhrmnreeilafikscqhecggisasighdphllytlsavqiltlydsinvidvnkvvey
vkglqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfg
crpgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcys
wwvlaslkiigrlhwidreklrnfilacqdeetggfadrpgdmvdpfhtlfgiaglsllg
eeqikpvnpvfcmpeevlqrvnvqpelvs

  • Chain 'C':
    No sequence available.