PDB entry 6j6t

View 6j6t on RCSB PDB site
Description: Crystal Structure of HDA15 HD domain
Class: gene regulation
Keywords: Histone deacetylase, Arabidopsis, GENE REGULATION
Deposited on 2019-01-15, released 2020-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone deacetylase 15
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: HDA15, At3g18520, MYF24_23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j6ta_
  • Chain 'B':
    Compound: Histone deacetylase 15
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: HDA15, At3g18520, MYF24_23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j6tb_
  • Chain 'C':
    Compound: Histone deacetylase 15
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: HDA15, At3g18520, MYF24_23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j6tc_
  • Chain 'D':
    Compound: Histone deacetylase 15
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: HDA15, At3g18520, MYF24_23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j6td_
  • Heterogens: ZN, K, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6j6tA (A:)
atsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitk
qelqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvk
ngfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeife
qnksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvv
lpiasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggyn
lrsisasatavikvllgenpenelpiattpsvaglqtvldvlniqlefwpslaisyskll
sele

    Sequence, based on observed residues (ATOM records): (download) 
    >6j6tA (A:)
sstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitkqe
lqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvkng
falvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeifeqn
ksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvvlp
iasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggynlr
sisasatavikvllgelpiattpsvaglqtvldvlniqlefwpslaisyskll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6j6tB (B:)
atsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitk
qelqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvk
ngfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeife
qnksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvv
lpiasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggyn
lrsisasatavikvllgenpenelpiattpsvaglqtvldvlniqlefwpslaisyskll
sele

    Sequence, based on observed residues (ATOM records): (download) 
    >6j6tB (B:)
atsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitk
qelqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvk
ngfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeife
qnksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvv
lpiasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggyn
lrsisasatavikvllgeattpsvaglqtvldvlniqlefwpslaisyskllsele

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6j6tC (C:)
atsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitk
qelqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvk
ngfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeife
qnksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvv
lpiasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggyn
lrsisasatavikvllgenpenelpiattpsvaglqtvldvlniqlefwpslaisyskll
sele

    Sequence, based on observed residues (ATOM records): (download) 
    >6j6tC (C:)
tavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitkqelq
mvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvkngfa
lvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeifeqnks
vlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvvlpia
safspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggynlrsi
sasatavikvllgesvaglqtvldvlniqlefwpslaisyskll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6j6tD (D:)
atsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitk
qelqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvk
ngfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeife
qnksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvv
lpiasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggyn
lrsisasatavikvllgenpenelpiattpsvaglqtvldvlniqlefwpslaisyskll
sele

    Sequence, based on observed residues (ATOM records): (download) 
    >6j6tD (D:)
tsstavgfdermllhsefevkaqphperpdrlraiaaslatagvfpgrclpinareitkq
elqmvhtsehvdavdttsqllysyftsdtyaneysaraarlaaglcadlatdiftgrvkn
gfalvrppghhagvrhamgfclhnnaavaalvaqaagakkvlivdwdvhhgngtqeifeq
nksvlyislhrheggnfypgtgaadevgsnggegycvnvpwscggvgdkdyifafqhvvl
piasafspdfviisagfdaargdplgccdvtpagysrmtqmlgdlcggkmlvileggynl
rsisasatavikvllgetpsvaglqtvldvlniqlefwpslaisyskllse