PDB entry 6j6a

View 6j6a on RCSB PDB site
Description: crystal structure of tlde from thermococcus kodakarensis
Deposited on 2019-01-14, released 2020-01-15
The last revision was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Zinc-dependent protease, TldD/PmbA family
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: TK0499
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD94 (2-End)
      • expression tag (0-1)
  • Chain 'B':
    Compound: Zinc-dependent protease, TldD/PmbA family
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: TK0499
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD94 (2-End)
      • expression tag (0-1)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j6aA (A:)
aamenlirfgekffdeleiavyrsrdieasvelneismastrsgaltiirgikdkrlgla
ivdsdepekvkeaieqaakmaklnspdekwvslpepgkyrekpkpnyelkeaspdilvek
lvkgiklarekdknavvaggaggvsweerhvlnshgldvfqeggaaymyleivgrkgsvv
tpgifdfdarrdlnldvegiveravqkvqwaynvvpskneevplifgpwaiaglfsytll
pafsgerlvkettplagkvgekiasevitlyddpfhplslrptiaddegvptrknvlien
gafkgfvwdnywakiygtestgngkrdirsgginigfhsvviengkrslediigeidrgy
lvdglqgahssnpdngnfavtanpafliedgevkgsavfliagnvyellqqasevskeqt
vmpfmntmitphikfenvkiagk

    Sequence, based on observed residues (ATOM records):
    >6j6aA (A:)
aamenlirfgekffdeleiavyrsrdieasvelneismastrsgaltiirgikdkrlgla
ivdsdepekvkeaieqaakmaklnspdekwvslpepgkyrekpkpnyelkeaspdilvek
lvkgiklarekdknavvaggaggvsweerhvlnshgldvfqeggaaymyleivgrkgsvv
tpgifdfdarrdlnldvegiveravqkvqwaynvvpskneevplifgpwaiaglfsytll
pafsgerlvkettplagkvgekiasevitlyddpfhplslrptiaddegvptrknvlien
gafkgfvwdnywakiygtestgngkrdirsgginigfhsvviengkrslediigeidrgy
lvdglqgahssnpdngnfavtanpafliedgevkgsavfliagnvyellqqasevskeqt
vmpfmntmitphikfenvkiag

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j6aB (B:)
aamenlirfgekffdeleiavyrsrdieasvelneismastrsgaltiirgikdkrlgla
ivdsdepekvkeaieqaakmaklnspdekwvslpepgkyrekpkpnyelkeaspdilvek
lvkgiklarekdknavvaggaggvsweerhvlnshgldvfqeggaaymyleivgrkgsvv
tpgifdfdarrdlnldvegiveravqkvqwaynvvpskneevplifgpwaiaglfsytll
pafsgerlvkettplagkvgekiasevitlyddpfhplslrptiaddegvptrknvlien
gafkgfvwdnywakiygtestgngkrdirsgginigfhsvviengkrslediigeidrgy
lvdglqgahssnpdngnfavtanpafliedgevkgsavfliagnvyellqqasevskeqt
vmpfmntmitphikfenvkiagk

    Sequence, based on observed residues (ATOM records):
    >6j6aB (B:)
aamenlirfgekffdeleiavyrsrdieasvelneismastrsgaltiirgikdkrlgla
ivdsdepekvkeaieqaakmaklnspdekwvslpepgkyrekpkpnyelkeaspdilvek
lvkgiklarekdknavvaggaggvsweerhvlnshgldvfqeggaaymyleivgrkgsvv
tpgifdfdarrdlnldvegiveravqkvqwaynvvpskneevplifgpwaiaglfsytll
pafsgerlvkettplagkvgekiasevitlyddpfhplslrptiaddegvptrknvlien
gafkgfvwdnywakiygtestgngkrdirsgginigfhsvviengkrslediigeidrgy
lvdglqgahssnpdngnfavtanpafliedgevkgsavfliagnvyellqqasevskeqt
vmpfmntmitphikfenvkiag