PDB entry 6j5b

View 6j5b on RCSB PDB site
Description: structural basis for the target dna recognition and binding by the myb domain of phosphate starvation response regulator 1
Deposited on 2019-01-10, released 2019-04-24
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(*gp*gp*tp*ap*cp*ap*gp*tp*ap*tp*ap*tp*ap*cp*cp*ap*tp*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(*gp*gp*tp*ap*cp*ap*gp*tp*ap*tp*ap*tp*ap*cp*cp*ap*tp*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: DNA (5'-d(*tp*tp*tp*ap*tp*gp*gp*tp*ap*tp*ap*tp*ap*cp*tp*gp*tp*ap*cp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (5'-d(*gp*gp*tp*ap*cp*ap*gp*tp*ap*tp*ap*tp*ap*cp*cp*ap*tp*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: Protein PHOSPHATE STARVATION RESPONSE 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PHR1, At4g28610, T5F17.60
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA (5'-d(*tp*tp*tp*ap*tp*gp*gp*tp*ap*tp*ap*tp*ap*cp*tp*gp*tp*ap*cp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'U':
    Compound: DNA (5'-d(*tp*tp*tp*ap*tp*gp*gp*tp*ap*tp*ap*tp*ap*cp*tp*gp*tp*ap*cp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j5bA (A:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bA (A:)
armrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtary

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j5bC (C:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bC (C:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtary

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j5bD (D:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bD (D:)
armrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtary

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6j5bF (F:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bF (F:)
karmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtary

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6j5bH (H:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bH (H:)
karmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtary

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6j5bJ (J:)
gkarmrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

    Sequence, based on observed residues (ATOM records):
    >6j5bJ (J:)
armrwtpelheafveavnslggseratpkgvlkimkvegltiyhvkshlqkyrtaryr

  • Chain 'K':
    No sequence available.

  • Chain 'U':
    No sequence available.