PDB entry 6j5a

View 6j5a on RCSB PDB site
Description: cryo-em structure of the mammalian dp-state atp synthase fo section
Deposited on 2019-01-10, released 2019-06-26
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 4.35 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '8':
    Compound: ATP synthase protein 8
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Mitochondrial H+ transporting ATP synthase subunit c isoform 1
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: ATP synthase subunit a
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: ATP synthase peripheral stalk-membrane subunit b
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: ATP synthase subunit d, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: ATP synthase subunit e, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5A (0-62)
  • Chain 'f':
    Compound: ATP synthase subunit f, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: ATP synthase subunit g, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5A (0-83)
  • Chain 'i':
    Compound: ATP synthase membrane subunit DAPIT
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: subunit k analog
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5A (0-28)
  • Chain 'u':
    Compound: ATP synthase membrane subunit 6.8PL
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5A (0-41)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '8':
    Sequence; same for both SEQRES and ATOM records:
    >6j5a8 (8:)
dtstwfititsmimtlfilfqlkisnysyp

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aK (K:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aL (L:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aM (M:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aN (N:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aO (O:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aP (P:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aQ (Q:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6j5aR (R:)
idtaakfigagaatvgvagsgagigtvfgsmiigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6j5aa (a:)
mnenlfasfiaptmmglpivtliimfpsllfptpkrlinnrtisiqqwliqltskqmmai
hnqkgqtwslmlmslimfigstnilgllphsftpttqlsmnlgmaiplwsatvftgfryk
tktslahflpqgtpallipmlviietislfiqpvalavrltanitaghllihliggatla
llnintmtafitftililltilefavaliqayvftllvslylhdnt

    Sequence, based on observed residues (ATOM records):
    >6j5aa (a:)
nenlfasfiaptmmglpivtliimfpsllfptpkrlinnrtisiqqwliqltskqmmaih
nqkgqtwslmlmslimfigstnilgllphsftpttqlsmnlgmaiplwsatvftgfrykt
ktslahflpqgtpallipmlviietislfiqpvalavrltanitaghllihliggatlal
lnintmtafitftililltilefavaliqayvftllvslylhd

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ab (b:)
pplpehggkvrlglipeeffqflypktgvtgpyvlgtglilyllskeiyvitaetfsais
tigvlvyivkkygasigafadk

  • Chain 'd':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ad (d:)
pfdqmtiedlnevfpetkldkkky

  • Chain 'e':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ae (e:)
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  • Chain 'f':
    Sequence; same for both SEQRES and ATOM records:
    >6j5af (f:)
asvvplkdrrllevklgelpswilmrdftpsgiagafqrgyyryynkyvnvkkgsvagls
mvlaayvvfnycrsykelkherlrkyh

  • Chain 'g':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ag (g:)
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  • Chain 'i':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ai (i:)
qfqftgikkyfnsytltgrmncvlatyggiallvlyfklrsk

  • Chain 'k':
    Sequence; same for both SEQRES and ATOM records:
    >6j5ak (k:)
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  • Chain 'u':
    Sequence; same for both SEQRES and ATOM records:
    >6j5au (u:)
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