PDB entry 6j2j

View 6j2j on RCSB PDB site
Description: crystal structure of bat (pteropus alecto) mhc class i ptal-n*01:01 in complex with mers-cov-derived peptide mers-cov-s3
Deposited on 2019-01-01, released 2019-09-18
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: MERS-CoV-S3
    Species: Middle East respiratory syndrome coronavirus, synthetic [TaxId:1335626]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2J (0-8)
  • Chain 'D':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: MERS-CoV-S3
    Species: Middle East respiratory syndrome coronavirus, synthetic [TaxId:1335626]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2J (0-8)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6j2jA (A:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveqqdp
qywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqla
ydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengre
tllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdg
ngafqkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6j2jB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j2jC (C:)
dftcsqisp

    Sequence, based on observed residues (ATOM records):
    >6j2jC (C:)
dfp

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6j2jD (D:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveqqdp
qywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqla
ydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengre
tllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdg
ngafqkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6j2jE (E:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6j2jF (F:)
dftcsqisp

    Sequence, based on observed residues (ATOM records):
    >6j2jF (F:)
dfp