PDB entry 6j2i

View 6j2i on RCSB PDB site
Description: crystal structure of bat (pteropus alecto) mhc class i ptal-n*01:01 in complex with h17n10 influenza-like virus-derivrd peptide h17n10-np
Deposited on 2019-01-01, released 2019-09-18
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: h17n10-np
    Species: H17N10 subtype, synthetic [TaxId:1129344]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2I (0-8)
  • Chain 'D':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: h17n10-np
    Species: H17N10 subtype, synthetic [TaxId:1129344]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2I (0-8)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iA (A:)
    gshgfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveq
    qdpqywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgyd
    qlaydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlen
    gretllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetr
    pdgngafqkwaalvvpsgeeqrytchvqheglpqpltlrw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iC (C:)
    dfekegysl
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iD (D:)
    gshgfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveq
    qdpqywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgyd
    qlaydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlen
    gretllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetr
    pdgngafqkwaalvvpsgeeqrytchvqheglpqpltlrw
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iE (E:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6j2iF (F:)
    dfekegysl