PDB entry 6j2h

View 6j2h on RCSB PDB site
Description: crystal structure of bat (pteropus alecto) mhc class i ptal-n*01:01 mutant (met52 asp53 leu54 deleted) in complex with hendra virus- derived peptide hev1
Deposited on 2019-01-01, released 2019-09-18
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ptal-N*01:01 (Met52 Asp53 Leu54 deleted)
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (2-100)
      • expression tag (0-1)
  • Chain 'C':
    Compound: HeV1
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2H (0-7)
  • Chain 'D':
    Compound: Ptal-N*01:01 (Met52 Asp53 Leu54 deleted)
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (2-100)
      • expression tag (0-1)
  • Chain 'F':
    Compound: HeV1
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2H (0-7)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j2hA (A:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwveqqdpqyw
drntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqlaydg
adyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengretll
radppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdgnga
fqkwaalvvpsgeeqrytchvqheglpqpltlrw

    Sequence, based on observed residues (ATOM records):
    >6j2hA (A:)
fhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwveqqdpqywd
rntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqlaydga
dyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengretllr
adppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdgngaf
qkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6j2hB (B:)
shiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfsk
dwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6j2hC (C:)
dfantflp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j2hD (D:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwveqqdpqyw
drntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqlaydg
adyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengretll
radppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdgnga
fqkwaalvvpsgeeqrytchvqheglpqpltlrw

    Sequence, based on observed residues (ATOM records):
    >6j2hD (D:)
fhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwveqqdpqywd
rntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqlaydga
dyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengretllr
adppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdgngaf
qkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6j2hE (E:)
shiqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfsk
dwsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6j2hF (F:)
dfantflp