PDB entry 6j2f

View 6j2f on RCSB PDB site
Description: crystal structure of bat (pteropus alecto) mhc class i ptal-n*01:01 in complex with hendra virus-derived peptide hev2
Deposited on 2019-01-01, released 2019-09-18
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: Pteropus alecto [TaxId:9402]
    Gene: PAL_GLEAN10023531
    Database cross-references and differences (RAF-indexed):
    • Uniprot L5K3Y9 (3-94)
      • expression tag (0-2)
      • expression tag (95-97)
  • Chain 'C':
    Compound: HeV2
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2F (0-8)
  • Chain 'D':
    Compound: Ptal-N*01:01
    Species: Pteropus alecto [TaxId:9402]
    Gene: Ptal-N
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: beta-2 microglobulin
    Species: Pteropus alecto [TaxId:9402]
    Gene: PAL_GLEAN10023531
    Database cross-references and differences (RAF-indexed):
    • Uniprot L5K3Y9 (3-94)
      • expression tag (0-2)
      • expression tag (95-97)
  • Chain 'F':
    Compound: HeV2
    Species: HENDRA VIRUS, synthetic [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J2F (0-8)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fA (A:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveqqdp
qywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqla
ydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengre
tllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdg
ngafqkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fB (B:)
eprtpkiqvysrhpaengkpnylncyvygfhppqieidllkngqkmkteqsdlsfskdws
fyllvhtdftpstvdeyscrvnhsslaaphmvkwdrnn

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fC (C:)
dyintnvlp

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fD (D:)
gfhslryfytawsrpgsgeprfvavgyvddtqfvrfdsdnaspraeprapwmdlveqqdp
qywdrntrnardaaqtyrvgldnvrgyynqseagshtiqrmygcdvgphgrllrgydqla
ydgadyialnedlrswtaadlaaqntrrkweeagyaerdraylegecvewllkhlengre
tllradppkthithhpisdrevtlrcwalgfypeeitltwqhdgedqtqemelvetrpdg
ngafqkwaalvvpsgeeqrytchvqheglpqpltlrw

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fE (E:)
eprtpkiqvysrhpaengkpnylncyvygfhppqieidllkngqkmkteqsdlsfskdws
fyllvhtdftpstvdeyscrvnhsslaaphmvkwdrnn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6j2fF (F:)
dyintnvlp