PDB entry 6j11

View 6j11 on RCSB PDB site
Description: MERS-CoV spike N-terminal domain and 7D10 scFv complex
Class: viral protein
Keywords: MERS-CoV, Antibody, VIRAL PROTEIN
Deposited on 2018-12-27, released 2019-07-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N-terminal domain of Spike glycoprotein
    Species: Middle East respiratory syndrome-related coronavirus [TaxId:1335626]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j11a_
  • Chain 'B':
    Compound: N-terminal domain of Spike glycoprotein
    Species: Middle East respiratory syndrome-related coronavirus [TaxId:1335626]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j11b_
  • Chain 'C':
    Compound: N-terminal domain of Spike glycoprotein
    Species: Middle East respiratory syndrome-related coronavirus [TaxId:1335626]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j11c_
  • Chain 'D':
    Compound: VH of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (Start-131)
    Domains in SCOPe 2.08: d6j11d_
  • Chain 'E':
    Compound: VL of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (0-110)
    Domains in SCOPe 2.08: d6j11e_
  • Chain 'F':
    Compound: VH of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (Start-131)
    Domains in SCOPe 2.08: d6j11f_
  • Chain 'G':
    Compound: VL of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (0-110)
    Domains in SCOPe 2.08: d6j11g_
  • Chain 'H':
    Compound: VH of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (Start-131)
    Domains in SCOPe 2.08: d6j11h1, d6j11h2
  • Chain 'L':
    Compound: VL of 7D10
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J11 (0-110)
    Domains in SCOPe 2.08: d6j11l_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11A (A:)
yvdvgpdsvksacievdiqqtffdktwprpidvskadgiiypqgrtysnitityqglfpy
qgdhgdmyvysaghatgttpqklfvanysqdvkqfangfvvrigaaanstgtviispsts
atirkiypafmlgssvgnfsdgkmgrffnhtlvllpdgcgtllrafycileprsgnhcpa
gnsytsfatyhtpatdcsdgnynrnaslnsfkeyfnlrnctfmytynitedeilewfgit
qtaqgvhlfssryvdlyggnmfqfatlpvydtikyysiiphsirsiqsdrkawaafyvyk
lqpltflldfsvdgyirraidcgfndlsqlhcsyes

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11B (B:)
yvdvgpdsvksacievdiqqtffdktwprpidvskadgiiypqgrtysnitityqglfpy
qgdhgdmyvysaghatgttpqklfvanysqdvkqfangfvvrigaaanstgtviispsts
atirkiypafmlgssvgnfsdgkmgrffnhtlvllpdgcgtllrafycileprsgnhcpa
gnsytsfatyhtpatdcsdgnynrnaslnsfkeyfnlrnctfmytynitedeilewfgit
qtaqgvhlfssryvdlyggnmfqfatlpvydtikyysiiphsirsiqsdrkawaafyvyk
lqpltflldfsvdgyirraidcgfndlsqlhcsyes

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11C (C:)
yvdvgpdsvksacievdiqqtffdktwprpidvskadgiiypqgrtysnitityqglfpy
qgdhgdmyvysaghatgttpqklfvanysqdvkqfangfvvrigaaanstgtviispsts
atirkiypafmlgssvgnfsdgkmgrffnhtlvllpdgcgtllrafycileprsgnhcpa
gnsytsfatyhtpatdcsdgnynrnaslnsfkeyfnlrnctfmytynitedeilewfgit
qtaqgvhlfssryvdlyggnmfqfatlpvydtikyysiiphsirsiqsdrkawaafyvyk
lqpltflldfsvdgyirraidcgfndlsqlhcsyes

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6j11D (D:)
gggsgggsgggsevqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewi
gaiypgngdtsytqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamd
ywgqgtsvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6j11D (D:)
evqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewigaiypgngdtsy
tqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamdywgqgtsvtvss

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11E (E:)
divmtqspasltvslgqratiscrasksvsasgynylhwyqqrpgqppklliylafnles
gvparfngsgsgtdftlnihpveeedaatyycqhsrdlpftfgsgtkleik

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6j11F (F:)
gggsgggsgggsevqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewi
gaiypgngdtsytqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamd
ywgqgtsvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6j11F (F:)
evqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewigaiypgngdtsy
tqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamdywgqgtsvtvss

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11G (G:)
divmtqspasltvslgqratiscrasksvsasgynylhwyqqrpgqppklliylafnles
gvparfngsgsgtdftlnihpveeedaatyycqhsrdlpftfgsgtkleik

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6j11H (H:)
gggsgggsgggsevqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewi
gaiypgngdtsytqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamd
ywgqgtsvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6j11H (H:)
gggsgggsevqlvesgaevvkpgasvkmsckasgypftsynihwikqtpgqglewigaiy
pgngdtsytqkfkvkatltsdkssstaymqlssltsedsavyfcarygnypsyamdywgq
gtsvtvss

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j11L (L:)
divmtqspasltvslgqratiscrasksvsasgynylhwyqqrpgqppklliylafnles
gvparfngsgsgtdftlnihpveeedaatyycqhsrdlpftfgsgtkleik