PDB entry 6j0y

View 6j0y on RCSB PDB site
Description: crystal structure of yeast rtt107 and slx4
Deposited on 2018-12-27, released 2019-08-14
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Regulator of Ty1 transposition protein 107
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RTT107, ESC4, YHR154W
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38850 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: Regulator of Ty1 transposition protein 107
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RTT107, ESC4, YHR154W
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38850 (1-End)
      • expression tag (0)
  • Chain 'C':
    Compound: Peptide from Structure-specific endonuclease subunit SLX4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SLX4, YLR135W, L3140
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12098 (5-57)
      • expression tag (0-4)
  • Chain 'D':
    Compound: Peptide from Structure-specific endonuclease subunit SLX4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SLX4, YLR135W, L3140
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j0yA (A:)
sstsllfeqlnflilvaaeaelpiahstrkllmdnscnncqiyelynenlkdvktdkdwf
mnkfgpqtvhfvisntinfpfykivyfdllipvvshtwvqdsvktkrhlrtnmyspnpfh
llrdcqvyiskssfnkceyilysdllhllggtlvnyisnrtthvivqspqdpiiatvskl
tfgsfsssstnkhtekplrewkfvypiwilyhfkmakplkgelatlceldmqdtseeqlf
akweevigdkqtsssqltlhpnktlfknhhfaispdlnfftplywflkgfiedldgkvtp
lsfsddlksvyqafpdidcyighsanspilektksikpeihvgnvswlfymfalqkftpv
sqcklihqpfhaklftskeltvaytnyfgsqrfyiqrlveilgglstpeltrknthlitk
stigkkfkvakkwsldpqnaiivtnhmwleqcymnnsklnpkdsrfqnfklddnmgwnig
qigmdhsslptpknlsmvtydtqsisekppptn

    Sequence, based on observed residues (ATOM records):
    >6j0yA (A:)
sstsllfeqlnflilvaaeaelpiahstrkllmdnscnncqiyelynenlkdvktdkdwf
mnkfgpqtvhfvisntinfpfykivyfdllipvvshtwvqdsvktkrhlrtnmyspnpfh
llrdcqvyiskssfnkceyilysdllhllggtlvnyisnrtthvivqspqdpiiatvskl
tfgekplrewkfvypiwilyhfkmakplkgelatlceldmqdtseeqlfakweevigdkq
tsssqltlhpnktlfknhhfaispdlnfftplywflkgfiedldgkvtplsfsddlksvy
qafpdidcyighsanspilektksikpeihvgnvswlfymfalqkftpvsqcklihqpfh
aklftskeltvaytnyfgsqrfyiqrlveilgglstpeltrknthlitkstigkkfkvak
kwsldpqnaiivtnhmwleqcymnnsklnpkdsrfqnfklddnmgwnigqigmdh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j0yB (B:)
sstsllfeqlnflilvaaeaelpiahstrkllmdnscnncqiyelynenlkdvktdkdwf
mnkfgpqtvhfvisntinfpfykivyfdllipvvshtwvqdsvktkrhlrtnmyspnpfh
llrdcqvyiskssfnkceyilysdllhllggtlvnyisnrtthvivqspqdpiiatvskl
tfgsfsssstnkhtekplrewkfvypiwilyhfkmakplkgelatlceldmqdtseeqlf
akweevigdkqtsssqltlhpnktlfknhhfaispdlnfftplywflkgfiedldgkvtp
lsfsddlksvyqafpdidcyighsanspilektksikpeihvgnvswlfymfalqkftpv
sqcklihqpfhaklftskeltvaytnyfgsqrfyiqrlveilgglstpeltrknthlitk
stigkkfkvakkwsldpqnaiivtnhmwleqcymnnsklnpkdsrfqnfklddnmgwnig
qigmdhsslptpknlsmvtydtqsisekppptn

    Sequence, based on observed residues (ATOM records):
    >6j0yB (B:)
sstsllfeqlnflilvaaeaelpiahstrkllmdnscnncqiyelynenlkdvktdkdwf
mnkfgpqtvhfvisntinfpfykivyfdllipvvshtwvqdsvktkrhlrtnmyspnpfh
llrdcqvyiskssfnkceyilysdllhllggtlvnyisnrtthvivqspqdpiiatvskl
tfekplrewkfvypiwilyhfkmakplkgelatlceldmqdtseeqlfakweevigdkqt
sssqltlhpnktlfknhhfaispdlnfftplywflkgfiedldgkvtplsfsddlksvyq
afpdidcyighsanspilektksikpeihvgnvswlfymfalqkftpvsqcklihqpfha
klftskeltvaytnyfgsqrfyiqrlveilgglstpeltrknthlitkstigkkfkvakk
wsldpqnaiivtnhmwleqcymnnsklnpkdsrfqnfklddnmgwnigqigmdh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6j0yC (C:)
gplgsgssirvkllqesvvklnpklvkhnfyrveandseeeetefddqfciadiqlvd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j0yD (D:)
gplgsgssirvkllqesvvklnpklvkhnfyrveandseeeetefddqfciadiqlvd

    Sequence, based on observed residues (ATOM records):
    >6j0yD (D:)
gssirvkllqesvvklnpklvkhnfyrveandseeeetefddqfciadiqlvd