PDB entry 6j0q

View 6j0q on RCSB PDB site
Description: Crystal structure of P domain from GII.11 swine norovirus
Class: viral protein
Keywords: capsid, protruding domain, dimer, HBGA recognition, swine, VIRAL PROTEIN
Deposited on 2018-12-25, released 2019-11-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 capsid protein
    Species: Norwalk-like virus Sw/NLV/VA34/1998/NL [TaxId:186636]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j0qa_
  • Chain 'B':
    Compound: VP1 capsid protein
    Species: Norwalk-like virus Sw/NLV/VA34/1998/NL [TaxId:186636]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j0qb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6j0qA (A:)
sktkpfslpsltldelsnsrfpapivqlytnphdnlvvqpqngrctidgllqgttqlvsc
nvcsfrgtlgdgqpashseeeimpmafniqreimlenldgspydptddipavlgspdfqg
vvfgilsqrntdgqtraheakvdtrlarfapklgfvvatventdfhanqpcrftpvglgg
dnnrdfnqwglpayggaltnntnlappvmpvypgeqllffrsqlpssggvvggwldcllp
qewvqhffqesatsqsdvalvryinpttgrvlfeaklhkqgfltvaasgsyplvvpadgy
frfeswvnqfytlapmgngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >6j0qA (A:)
kpfslpsltldelsnsrfpapivqlytnphdnlvvqpqngrctidgllqgttqlvscnvc
sfrgtlgdgqpamafniqreimlenldgspydptddipavlgspdfqgvvfgilsqrntd
gqtraheakvdtrlarfapklgfvvatventdfhanqpcrftpvglggdnnrdfnqwglp
ayggaltnntnlappvmpvypgeqllffrsqlpssggvvggwldcllpqewvqhffqesa
tsqsdvalvryinpttgrvlfeaklhkqgfltvaasgsyplvvpadgyfrfeswvnqfyt
lapmgng

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6j0qB (B:)
sktkpfslpsltldelsnsrfpapivqlytnphdnlvvqpqngrctidgllqgttqlvsc
nvcsfrgtlgdgqpashseeeimpmafniqreimlenldgspydptddipavlgspdfqg
vvfgilsqrntdgqtraheakvdtrlarfapklgfvvatventdfhanqpcrftpvglgg
dnnrdfnqwglpayggaltnntnlappvmpvypgeqllffrsqlpssggvvggwldcllp
qewvqhffqesatsqsdvalvryinpttgrvlfeaklhkqgfltvaasgsyplvvpadgy
frfeswvnqfytlapmgngsg

    Sequence, based on observed residues (ATOM records): (download) 
    >6j0qB (B:)
tkpfslpsltldelsnsrfpapivqlytnphdnlvvqpqngrctidgllqgttqlvscnv
csfrgtlgdgqpamafniqreimlenldgspydptddipavlgspdfqgvvfgilsqrnt
dgqtraheakvdtrlarfapklgfvvatventdfhanqpcrftpvglggdnnrdfnqwgl
payggaltnntnlappvmpvypgeqllffrsqlpssggvvggwldcllpqewvqhffqes
atsqsdvalvryinpttgrvlfeaklhkqgfltvaasgsyplvvpadgyfrfeswvnqfy
tlapmgng