PDB entry 6j0m

View 6j0m on RCSB PDB site
Description: cryo-em structure of an extracellular contractile injection system, pvc baseplate in extended state (reconstructed with c3 symmetry)
Deposited on 2018-12-24, released 2019-04-10
The last revision was dated 2019-04-17, with a file datestamp of 2019-04-12.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pvc8
    Species: Photorhabdus asymbiotica [TaxId:291112]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J0M
  • Chain 'B':
    Compound: Pvc8
    Species: Photorhabdus asymbiotica [TaxId:291112]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J0M
  • Chain 'C':
    Compound: Pvc8
    Species: Photorhabdus asymbiotica [TaxId:291112]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J0M

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j0mA (A:)
mshqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahc
qvgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkd
ksekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaie
dvqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqs
ggrygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgef
llkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpilpd
apelhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgde
viigffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmir
inagenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinltq

    Sequence, based on observed residues (ATOM records):
    >6j0mA (A:)
shqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahcq
vgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkdk
sekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaied
vqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqsg
grygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgefl
lkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpildap
elhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgdevi
igffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmirin
agenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinlt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j0mB (B:)
mshqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahc
qvgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkd
ksekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaie
dvqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqs
ggrygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgef
llkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpilpd
apelhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgde
viigffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmir
inagenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinltq

    Sequence, based on observed residues (ATOM records):
    >6j0mB (B:)
shqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahcq
vgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkdk
sekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaied
vqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqsg
grygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgefl
lkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpildap
elhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgdevi
igffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmirin
agenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinlt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j0mC (C:)
mshqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahc
qvgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkd
ksekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaie
dvqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqs
ggrygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgef
llkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpilpd
apelhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgde
viigffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmir
inagenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinltq

    Sequence, based on observed residues (ATOM records):
    >6j0mC (C:)
shqlkiiadgkalsllaavdvdtcyrvnsipsatlklsvpdrplssfsqtdvqtelahcq
vgktlrlelidgskkwvlfnglitrkalriknkqllltlvvkhrlqlmvdtqhsqlfkdk
sekailstllnqtginarfgkiaaldqkheqmvqfrcsdwhfllcrlsatgawllpaied
vqfvqpdalksnsaytlksrgdenkdivvkdaywqfdnqinpallevsgwdiskqqvqsg
grygkialgkaalspdglaslnktgwdicyssplttqesgylaqglllnqrisgvtgefl
lkgdgryqlgdniqltgfgsqldgtasitevrhrlnrridwettvsiglqheylpildap
elhiatvakyqqdsavlnripiilpvlnrpneflwarlgkpyashesgfcfypepgdevi
igffendprypvilgamhnpknkapfeptqdnrekvlivkkgeaqqqlvidgkekmirin
agenqimlqqdkdislstkkeltlkaqtmnatmdkslamsgknsveikgakinlt