PDB entry 6j0f

View 6j0f on RCSB PDB site
Description: cryo-em structure of an extracellular contractile injection system, pvc sheath/tube terminator in extended state
Deposited on 2018-12-24, released 2019-04-10
The last revision was dated 2019-04-17, with a file datestamp of 2019-04-12.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Pvc16
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03338, PA-RVA20-21-0156
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Pvc1
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03353, PA-RVA20-21-0171
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j0fA (A:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fA (A:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j0fB (B:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fB (B:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j0fC (C:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fC (C:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j0fD (D:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fD (D:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6j0fE (E:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fE (E:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6j0fF (F:)
mlntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsa
esrgfdvyagrllpgwvnikcnylityweaskpatdasspdsqpdnqaiqvmsqvlnali
nnrqlagipgaytqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpv
tavsstveqtaslsqevvshalrellitelgggednrlvlskvelsavketmtqdspaqm
iillsvsgitrqeylkeidnifdrwvnnaevittiddcgiriesitkdnlvgi

    Sequence, based on observed residues (ATOM records):
    >6j0fF (F:)
lntqtiidvnkamdamlraylnqdiairfdlpeldtmqsdamvsiflydihedlqlrsae
srgfdvyagrllpgwvnikcnylityweasqpdnqaiqvmsqvlnalinnrqlagipgay
tqvvppkeslnslgnfwqslgnrprlslnysvtvpvslndgqdsatpvtavsstveqtas
lsqevvshalrellitelgggednrlvlskvelsavketmtqdmiillsvsgitrqeylk
eidnifdrwvnnaevicgiriesitkdnlvgi

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6j0fa (a:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0fa (a:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6j0fb (b:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0fb (b:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6j0fc (c:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0fc (c:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6j0fd (d:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0fd (d:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6j0fe (e:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0fe (e:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa

  • Chain 'f':
    Sequence, based on SEQRES records:
    >6j0ff (f:)
mststsqiaveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsq
stnitlrkgvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsl
tspsfdatsndiavqeitlmadrvimqav

    Sequence, based on observed residues (ATOM records):
    >6j0ff (f:)
aveypipvyrfivsvgdekipfnsvsgldisydtieyrdgvgnwfkmpgqsqstnitlrk
gvfpgktelfdwinsiqlnqvekkditisltndagtellmtwnvsnafptsltspsfdat
sndiavqeitlmadrvimqa