PDB entry 6j0c

View 6j0c on RCSB PDB site
Description: cryo-em structure of an extracellular contractile injection system, pvc sheath complex in contracted state
Deposited on 2018-12-23, released 2019-04-10
The last revision was dated 2019-04-17, with a file datestamp of 2019-04-12.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Pvc2
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_03352, PA-RVA20-21-0170
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6j0cA (A:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cA (A:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6j0cB (B:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cB (B:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6j0cC (C:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cC (C:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6j0cD (D:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cD (D:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6j0cE (E:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cE (E:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6j0cF (F:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cF (F:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6j0ca (a:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0ca (a:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6j0cb (b:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cb (b:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6j0cc (c:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cc (c:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6j0cd (d:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cd (d:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6j0ce (e:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0ce (e:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

  • Chain 'f':
    Sequence, based on SEQRES records:
    >6j0cf (f:)
mttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlig
nfnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcq
pgkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvy
asvdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgart
ledkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggl
agskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr

    Sequence, based on observed residues (ATOM records):
    >6j0cf (f:)
ttvtsypgvyieelnslalsvsnsatavpvfavdeqnqyisednairinswmdylnlign
fnnedkldvsvrayfangggycylvkttslekiiptlddvtllvaagedikttvdvlcqp
gkglfavfdgpeteltingaeeakqaytatpfaavyypwlkadwanidippsavmagvya
svdlsrgvwkapanvalkgglepkflvtdelqgeyntgrainmirnfsntgttvwgartl
edkdnwryvpvrrlfnsverdikramsfamfepnnqptwervraaisnylyslwqqggla
gskeedayfvqigkgitmtqeqidagqmivkvglaavrpaefiilqftqdveqr