PDB entry 6izo

View 6izo on RCSB PDB site
Description: Crystal structure of DNA polymerase sliding clamp from Caulobacter crescentus
Class: transferase,DNA binding protein,protein binding
Keywords: Homodimer, TRANSFERASE, DNA BINDING PROTEIN, PROTEIN BINDING
Deposited on 2018-12-20, released 2019-11-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-10, with a file datestamp of 2020-06-05.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta sliding clamp
    Species: Caulobacter vibrioides CB15 [TaxId:190650]
    Gene: dnaN, CC_0156
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CAU5 (20-391)
      • expression tag (19)
    Domains in SCOPe 2.08: d6izoa1, d6izoa2, d6izoa3, d6izoa4
  • Chain 'B':
    Compound: Beta sliding clamp
    Species: Caulobacter vibrioides CB15 [TaxId:190650]
    Gene: dnaN, CC_0156
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CAU5 (20-391)
      • expression tag (19)
    Domains in SCOPe 2.08: d6izob1, d6izob2, d6izob3, d6izob4
  • Heterogens: EDO, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6izoA (A:)
mgsshhhhhhssglvpgrgsmkltieraallkalghvqsvverrntipilsnillsaegd
rlsfsatdldmeiidegfaqidvpgqitapahtlyeivrklpdgadvslsfsgddprlvi
qagrsrfnlpvlpagdfpvmssdglssriavdtnelirlidktrfaisteetryylngly
vhtvneggetklravatdghrlalaempapegavgipgvivprktiaearrlmesagetv
dlqvspqkvrfefgaaaltskvidgafpdymrviprdnakiltldndlfakavdrvatis
aeksrsvklavepgritltvrnmeagqaveevevdydgepfeigfnarylldvcgqiagp
qaefrfadpasptlvvdpvdpgvkyvlmplrv

    Sequence, based on observed residues (ATOM records): (download) 
    >6izoA (A:)
smkltieraallkalghvqsvverrntipilsnillsaegdrlsfsatdldmeiidegfa
qidvpgqitapahtlyeivrklpdgadvslsfsgddprlviqagrsrfnlpvlpagdfpv
mssdglssriavdtnelirlidktrfaisteetryylnglyvhtvneggetklravatdg
hrlalaempapegavipgvivprktiaearrlmesagetvdlqvspqkvrfefgaaalts
kvidgafpdymrviprdnakiltldndlfakavdrvatisasrsvklavepgritltvrn
meagqaveevevdydgepfeigfnarylldvcgqiagpqaefrfadpasptlvvdpvdpg
vkyvlmplrv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6izoB (B:)
mgsshhhhhhssglvpgrgsmkltieraallkalghvqsvverrntipilsnillsaegd
rlsfsatdldmeiidegfaqidvpgqitapahtlyeivrklpdgadvslsfsgddprlvi
qagrsrfnlpvlpagdfpvmssdglssriavdtnelirlidktrfaisteetryylngly
vhtvneggetklravatdghrlalaempapegavgipgvivprktiaearrlmesagetv
dlqvspqkvrfefgaaaltskvidgafpdymrviprdnakiltldndlfakavdrvatis
aeksrsvklavepgritltvrnmeagqaveevevdydgepfeigfnarylldvcgqiagp
qaefrfadpasptlvvdpvdpgvkyvlmplrv

    Sequence, based on observed residues (ATOM records): (download) 
    >6izoB (B:)
smkltieraallkalghvqsvverrntipilsnillsaegdrlsfsatdldmeiidegfa
qidvpgqitapahtlyeivrklpdgadvslsfddprlviqagrsrfnlpvlpagdfpvms
sdglssriavdtnelirlidktrfaisteetryylnglyvhtvneggetklravatdghr
lalaempapegavgipgvivprktiaearrlmesagetvdlqvspqkvrfefgaaaltsk
vidgafpdymrviprdnakiltldndlfakavdrvatisaeksrsvklavepgritltvr
nmeagqaveevevdydgepfeigfnarylldvcgqiagpqaefrfadpasptlvvdpvdp
gvkyvlmplrv