PDB entry 6iy3

View 6iy3 on RCSB PDB site
Description: structure of snf2-mmtv-a nucleosome complex at shl-2 in adp state
Deposited on 2018-12-12, released 2019-04-03
The last revision was dated 2019-04-03, with a file datestamp of 2019-03-29.
Experiment type: EM
Resolution: 3.67 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18002543mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591, XELAEV_18003602mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032685mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18002543mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591, XELAEV_18003602mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032685mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (147-mer)
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Chain 'J':
    Compound: DNA (147-mer)
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Chain 'O':
    Compound: Transcription regulatory protein SNF2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SNF2, GAM1, RIC1, SWI2, TYE3, YOR290C
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6iy3A (A:)
kkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqea
seaylvalfedtnlaaihakrvtimpkdiqlarrirgera

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iy3B (B:)
akrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyte
hakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >6iy3B (B:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iy3C (C:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkte

    Sequence, based on observed residues (ATOM records):
    >6iy3C (C:)
rakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaa
rdnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkte

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6iy3D (D:)
krrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrs
titsreiqtavrlllpgelakhavsegtkavtkytsak

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6iy3E (E:)
kkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqea
seaylvalfedtnlaaihakrvtimpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records):
    >6iy3E (E:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlaaihakrvtimpkdiqlarrirgera

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6iy3F (F:)
akrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyte
hakrktvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6iy3G (G:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkte

    Sequence, based on observed residues (ATOM records):
    >6iy3G (G:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6iy3H (H:)
krrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrs
titsreiqtavrlllpgelakhavsegtkavtkytsak

    Sequence, based on observed residues (ATOM records):
    >6iy3H (H:)
rrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrst
itsreiqtavrlllpgelakhavsegtkavtkytsak

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6iy3O (O:)
lldqtkdtrithllrqtnafldsltravkdqqkytkemidshikeaseevddlsmvpkmk
deeydddddnsnvdyynvahrikedikkqpsilvggtlkdyqikglqwmvslfnnhlngi
lademglgktiqtislltylyemknirgpylvivplstlsnwssefakwaptlrtisfkg
spnerkakqakiragefdvvlttfeyiikerallskvkwvhmiideghrmknaqsklslt
lnthyhadyrliltgtplqnnlpelwallnfvlpkifnsvksfdewfntpfantggqdki
elseeetllvirrlhkvlrpfllrrlkkdvekelpdkvekvvkckmsalqqimyqqmlky
rrlfigdqnnkkmvglrgfnnqimqlkkicnhpfvfeevedqinptretnddiwrvagkf
elldrilpklkatghrvliffqmtqimdimedflryinikylrldghtksdersellrlf
napdseylcfilstragglglnlqtadtviifdtdwnphqdlqaqdrahrigqknevril
rlittnsveevileraykkldidgkviqagkfdnkstseeqeallrslldaeeerrkkre
sgveeeeelkdseineilarndeemavltrmdedrskkeeelgvksrllekselpdiysr
digaelkreesesaavyng

    Sequence, based on observed residues (ATOM records):
    >6iy3O (O:)
lldqtkdtrithllrqtnafldyynvahrikedikkqpsilvggtlkdyqikglqwmvsl
fnnhlngilademglgktiqtislltylyemknirgpylvivplstlsnwssefakwapt
lrtisfkgspnerkakqakiragefdvvlttfeyiikerallskvkwvhmiideghrmkn
aqsklsltlnthyhadyrliltgtplqnnlpelwallnfvlpkifnsvksfdewfntpfd
kielseeetllvirrlhkvlrpfllrrlkkdvekelpdkvekvvkckmsalqqimyqqml
kyrrlgfnnqimqlkkicnhpfvfeevedqinptretnddiwrvagkfelldrilpklka
tghrvliffqmtqimdimedflryinikylrldghtksdersellrlfnapdseylcfil
stragglglnlqtadtviifdtdwnphqdlqaqdrahrigqknevrilrlittnsveevi
leraykkldidgkviqagkfdnkstseeqeallrslldaeeerrkkrelkdseineilar
ndeemavltrmdedrskkeeksrllekkreesesaavyng